Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J17
         (904 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    33   0.71 
AY051668-1|AAK93092.1|  507|Drosophila melanogaster LD21785p pro...    29   6.6  
AE014296-2430|AAF49704.1|  507|Drosophila melanogaster CG5295-PA...    29   6.6  
AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p pro...    29   8.7  
AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p pro...    29   8.7  
AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubuli...    29   8.7  
AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA...    29   8.7  
AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-P...    29   8.7  

>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 32.7 bits (71), Expect = 0.71
 Identities = 25/104 (24%), Positives = 38/104 (36%)
 Frame = +1

Query: 268 NLCQAENWPNNTTTDIELRNAFKIAQHIEKCLEKLQKRNLLNEFLSTLYNYDDKSCYVLK 447
           N+C     P N   D  ++  FKI            K  L  EF    + YDD  C + +
Sbjct: 638 NVCPISEKPLN---DFNIQLLFKITPDTNNATLTPFKHKLRREFCKPNFQYDDVVCILRQ 694

Query: 448 NCFADSTKAVLKKIIVSDCSINQIDISLNIYIEIFDEDKLVECL 579
           +   + T AV       D     ++ +   Y     + KL+ CL
Sbjct: 695 SLKPNKTCAV----FAPDHIFQMVEQAYQTYFSAHSQFKLIRCL 734


>AY051668-1|AAK93092.1|  507|Drosophila melanogaster LD21785p
           protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 625 NLPAHIPNCFLLELKSQIFLYNLSTTKDSKMFLEQLLTNCNNSL 756
           +LPA +P  FLL   S+I       TK +++ +E L+   N+++
Sbjct: 321 SLPATVPMDFLLATISKISALTPKLTKQARVMVEDLILQLNHAM 364


>AE014296-2430|AAF49704.1|  507|Drosophila melanogaster CG5295-PA
           protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 625 NLPAHIPNCFLLELKSQIFLYNLSTTKDSKMFLEQLLTNCNNSL 756
           +LPA +P  FLL   S+I       TK +++ +E L+   N+++
Sbjct: 321 SLPATVPMDFLLATISKISALTPKLTKQARVMVEDLILQLNHAM 364


>AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p
           protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +1

Query: 376 KRNLLNEFLSTLYNYDDKSCYVLKNCFADSTKAVLKKII--VSDCS--INQIDISLNIYI 543
           +RN ++  +S  +   D     LK+ FADS  AV   ++   SD +  +N  D+  N+Y+
Sbjct: 344 QRNTVSIIISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISNLYV 403

Query: 544 EIFDEDKLVECLSDIML 594
            + ++ K V  L D+++
Sbjct: 404 SMVEKIKGV--LQDLLI 418


>AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p
           protein.
          Length = 1351

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 836 INASLIQTISLSCLWLSLNKLTTKISIRLLLQFVNNCSKNIFESL 702
           +N  +  +  LS +WL+++    K  + LL+ F+   S+N F  L
Sbjct: 396 LNTGITGSFLLSSIWLAIDTCGNKDFLHLLIYFLRCISRNYFIQL 440


>AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubulin
           ring protein protein.
          Length = 1351

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 836 INASLIQTISLSCLWLSLNKLTTKISIRLLLQFVNNCSKNIFESL 702
           +N  +  +  LS +WL+++    K  + LL+ F+   S+N F  L
Sbjct: 396 LNTGITGSFLLSSIWLAIDTCGNKDFLHLLIYFLRCISRNYFIQL 440


>AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA
           protein.
          Length = 1351

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 836 INASLIQTISLSCLWLSLNKLTTKISIRLLLQFVNNCSKNIFESL 702
           +N  +  +  LS +WL+++    K  + LL+ F+   S+N F  L
Sbjct: 396 LNTGITGSFLLSSIWLAIDTCGNKDFLHLLIYFLRCISRNYFIQL 440


>AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-PA
           protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +1

Query: 376 KRNLLNEFLSTLYNYDDKSCYVLKNCFADSTKAVLKKII--VSDCS--INQIDISLNIYI 543
           +RN ++  +S  +   D     LK+ FADS  AV   ++   SD +  +N  D+  N+Y+
Sbjct: 344 QRNTVSIIISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISNLYV 403

Query: 544 EIFDEDKLVECLSDIML 594
            + ++ K V  L D+++
Sbjct: 404 SMVEKIKGV--LQDLLI 418


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,460,884
Number of Sequences: 53049
Number of extensions: 711419
Number of successful extensions: 2020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)