Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J17
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.2  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    23   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   8.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 902 FSSHXKAFPETLQLWFFRSITFINASLIQTISLSCLWLSLNKLTTKISI--RLLLQFVNN 729
           FSS    F    ++ FF    +I + LI  IS    WL ++    +I +    +L F+  
Sbjct: 218 FSSISITFKLAREMGFFMMDYYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTFMTL 277

Query: 728 CSK 720
            SK
Sbjct: 278 ASK 280


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 31

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 325 FLVLCQLLCCWANFLPDRD*RNLEKS 248
           F+V C  + C    + +   RNLEKS
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEKS 31


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 325 FLVLCQLLCCWANFLPDRD*RNLEKS 248
           F+V C  + C    + +   RNLEKS
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEKS 31


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 97  ICVQFKMSKVTFKITLTSD 153
           IC++ K +++ FKI +T D
Sbjct: 514 ICLKEKENEIDFKIEVTED 532


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 700 LWKDCTKKFDFLI 662
           +WK C  K D+L+
Sbjct: 199 IWKQCEGKIDYLV 211


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 135 LESYFRHFKLYTNLKNYVQFRFPIYYK 55
           + S   ++K Y+N  NY  +   +YYK
Sbjct: 82  ISSLSNNYK-YSNYNNYNNYNKKLYYK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,609
Number of Sequences: 438
Number of extensions: 4889
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)