Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J14
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638...    30   1.2  
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059...    28   5.0  

>11_01_0760 +
           6385866-6385955,6386629-6386682,6386863-6387012,
           6387120-6387461
          Length = 211

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 129 SSVGGAAMTVAXKG-ESYNDDQFHF**FWFV 40
           S++GG   TV     ESYND Q HF   WFV
Sbjct: 19  STIGGCFPTVEEVDPESYNDSQTHFTTSWFV 49


>04_04_1291 -
           32404716-32404946,32405377-32405478,32405731-32405910,
           32406023-32406100,32407501-32407620,32407713-32407805,
           32408369-32408443,32408673-32408828,32408957-32409040,
           32409773-32410450,32411814-32411877,32411968-32411978
          Length = 623

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 174 PSGLASNSDRTILG*SSVGGAAMTVAXKGESYNDDQF 64
           PS   SN  + +LG   VG AAM     G  Y DDQF
Sbjct: 58  PSQSGSNVPKVLLGTLMVGAAAMAAYQAG--YIDDQF 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,727
Number of Sequences: 37544
Number of extensions: 286496
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)