Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J14
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog prote... 29 1.9
AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog (hedg... 29 1.9
Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 27 7.7
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 27 7.7
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 27 7.7
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 27 7.7
>AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog protein
WRT-5 protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 239 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 129
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 5, isoform a protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 239 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 129
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical
protein ZK1053.7 protein.
Length = 156
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 281 VRGSYSYTNTDGKPETITYF 340
++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 315 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 428
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 315 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 428
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.5 bits (58), Expect = 7.7
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Frame = -3
Query: 514 SEHQIN-NE*QENVVDASPHNPVLRLHYLNLSREFRSLARGGGDLRNRFTLSMVSSLVSE 338
SEHQ + N + V+ PH P L YLN S + L+ ++ L +E
Sbjct: 180 SEHQEDCNSKRNPVLPTGPHIPSLEKFYLNPSLRQDYIFYATAILQIPL---LILCLKTE 236
Query: 337 VRNGFRFAVSVRVTV---ASTHSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVVSSIG 167
+ ++S+R T T++NNN +SL Q + V SL++V++ S+
Sbjct: 237 FNVSMKTSISIRRTEYDDIETNNNNNNHHHENCQSLTQQSD------VSSLKLVLLCSVV 290
Query: 166 AGV 158
A +
Sbjct: 291 ASI 293
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.5 bits (58), Expect = 7.7
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Frame = -3
Query: 514 SEHQIN-NE*QENVVDASPHNPVLRLHYLNLSREFRSLARGGGDLRNRFTLSMVSSLVSE 338
SEHQ + N + V+ PH P L YLN S + L+ ++ L +E
Sbjct: 183 SEHQEDCNSKRNPVLPTGPHIPSLEKFYLNPSLRQDYIFYATAILQIPL---LILCLKTE 239
Query: 337 VRNGFRFAVSVRVTV---ASTHSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVVSSIG 167
+ ++S+R T T++NNN +SL Q + V SL++V++ S+
Sbjct: 240 FNVSMKTSISIRRTEYDDIETNNNNNNHHHENCQSLTQQSD------VSSLKLVLLCSVV 293
Query: 166 AGV 158
A +
Sbjct: 294 ASI 296
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 315 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 428
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 315 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 428
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,103
Number of Sequences: 27780
Number of extensions: 232548
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -