Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J13
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    70   4e-13
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    43   4e-05
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.9  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   6.9  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   9.1  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
 Frame = +2

Query: 500 PAYNEEKRLPPMLDETIEFLENRQKENPS---YKYEIIIVSDGSKDSTVKVAESYSIKYG 670
           PAYNE KR+  ML ET++ LE   + + S    ++EI+IV D SKD+TV     +S K  
Sbjct: 69  PAYNESKRIGNMLQETVDHLEKYYRSSSSAGQRRWEILIVDDESKDTTVNAVLEFSNKLD 128

Query: 671 -SDKVKCLELIKNRGKGGAVRLGIQSSRGATILXA 772
             D ++   L +NRGKGGAV  G+  +RG   + A
Sbjct: 129 LRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAIFA 163


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 27/89 (30%), Positives = 41/89 (46%)
 Frame = +2

Query: 500 PAYNEEKRLPPMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDK 679
           P YNE K LP      I +L  +  +     +EI+I+ D S D T +VA+     YG DK
Sbjct: 9   PTYNERKNLP-----IITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKELQKIYGEDK 63

Query: 680 VKCLELIKNRGKGGAVRLGIQSSRGATIL 766
           +         G G A   G++ + G  ++
Sbjct: 64  ILLKPRSGKLGLGTAYIHGLKFATGDFVI 92


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +3

Query: 462 YLKKNLLA*V*LFLHIMKKKDC-----HPCWMKQLSSWRT 566
           YL  N L+      H +KK  C     HPC ++++ +WRT
Sbjct: 328 YLDSNPLSIQRTITHFIKKLVCNECSMHPCDIEEIIAWRT 367


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 530 PMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTV-KVAESYSI 661
           P+L +T+E L+ + KE  +Y Y         +D TV ++   +S+
Sbjct: 159 PVLKQTLELLKKKWKEEKNYAYICDQFKSLRQDLTVQRIQNEFSV 203


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 545 TIEFLENRQKENPSYKYEIIIVSDGSKDSTVKVAESYS 658
           T+  L  + +EN S KY II+ +  S+ + ++    +S
Sbjct: 240 TVAQLVQKLEENDSLKYSIIVAATASESAPLQYLAPFS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,061
Number of Sequences: 5004
Number of extensions: 47284
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)