Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J08
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      46   3e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    45   1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    36   0.004
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    31   0.13 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    28   0.94 
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   3.8  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.8  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    25   8.8  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   8.8  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 107 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSXHEGE 280
           ST P  ++      C  CG S+ A     A G K H  CFKC  C + L+       EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303

Query: 281 LYCKVCHARKF 313
            YC + +  +F
Sbjct: 304 FYCHLDYHEQF 314



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 140 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSXHEGELYCKVCHA 304
           KC KC K +     + + G ++H  C+ CG C  LL        E    C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 143 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSXHEGELYCKVC 298
           C KC +SV +  +   GG  WH  CFKC  C K LD ++       + +++CK+C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 143 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSXHEGELYCKVC 298
           C +CG++    E  ++ GG  WHK CF C  C K L+ ++       +G   C  C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74



 Score = 32.3 bits (70), Expect = 0.058
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 137 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSXHEGELYCKVC 298
           P C  C  +  A   R+      +G   +H+ CF+C  C+K +  +N       ++C  C
Sbjct: 69  PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +2

Query: 143 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSXHEGELYCKVCH 301
           C  CG    A ++ ++    W K C  CGL   +    +     G   C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCH 155


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +2

Query: 110 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSXHEGELYC 289
           T+P      P+C  CG++ + A E   G +     C+ C   Q    ++ C+  + E  C
Sbjct: 8   TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60

Query: 290 KVC 298
             C
Sbjct: 61  YAC 63


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 252 ESSNFWHRPHLKHILCHLRPP 190
           E+SN++  P L+H LCH  PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 161 SVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCS 265
           SVY A+++    L+WH      G+   L  ST  S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 200 KWHKMCFKCGLCQKLLDSTNCSXHEGELYCKVCH 301
           K+H  C  CG C+   +S     +   ++CK C+
Sbjct: 65  KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 492 KVQYGVRSRSTTGWPRCVSAIRN 424
           K+Q  +   ++T WP+C+  I N
Sbjct: 32  KLQQAIHQFTSTCWPKCIGNIGN 54


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 486 QYGVRSRSTTGWPRCVSAIRNFC 418
           +YG+++  +  W +C   IR +C
Sbjct: 50  KYGIQTGFSKYWKKCTYGIREYC 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,388
Number of Sequences: 5004
Number of extensions: 40943
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)