Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J03
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 128 4e-31
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 26 2.9
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 2.9
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 6.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.7
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.7
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 24 8.8
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 24 8.8
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 24 8.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 24 8.8
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 128 bits (309), Expect = 4e-31
Identities = 57/72 (79%), Positives = 65/72 (90%)
Frame = +1
Query: 136 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 315
M+EV CNDRLGKKVRVKC PDDTVGD KKL+AAQTGT +IVLKKW++VFKD+I LADY
Sbjct: 1 MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60
Query: 316 EIHDGMNLELYY 351
EIHDGM+LE+YY
Sbjct: 61 EIHDGMSLEMYY 72
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 2.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 205 RYRQGCI*LEPSYRVD-HCMLLQAFCXQISXQFY*EIKYINSNFLFVLVILPPFKIFTAV 29
R +Q C E R+ C L + F +S + +I+ + + VL++LPPF +
Sbjct: 51 RSKQNCRLKEIYCRLKIRCRLKKKFIKSLSKKII-SYHFISFHTIVVLLLLPPFSHLLVL 109
Query: 28 L--MVFITFFF 2
+ VF T F+
Sbjct: 110 VYPSVFTTAFY 120
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 238 FVRLLTSLNHPRY 200
FV+ +TSLNHP Y
Sbjct: 87 FVKYITSLNHPEY 99
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 172 KVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHI 300
K + NP++T+ D+K+LI G ++D+ + K F HI
Sbjct: 87 KNQAPSNPENTIFDIKRLI----GRKFDEKTMAKDIKSFPFHI 125
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 190 NPDDTVGDLKKL 225
NPDDT+ +LKK+
Sbjct: 243 NPDDTIAELKKI 254
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 133 KMLEVTCNDRLGKKVR--VKCNPDDT 204
+++EV CNDR G + +K +P++T
Sbjct: 1872 EVIEVVCNDRSGHRQSSVIKIDPNET 1897
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 257 LSYLVPVCAAINFFKSPTVSSGLHLTRT 174
+S + P+C+A+ + T+S+ L + +T
Sbjct: 172 ISVIAPICSALGTVVATTISTPLDIVKT 199
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 8.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 169 KKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLEL 345
+K V + + +V LK+ IA ++ L V KD L Y+I DG ++ L
Sbjct: 14 QKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHL 72
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 205 VGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLAD 312
V +++ + + G Y+KIVL + + +D +KL D
Sbjct: 65 VSSIEEALELRHGGIYNKIVLLEGFFTEEDELKLID 100
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 360 LLLIVQLQI--HSIVDFIVCKFNMILEYCVPFLEYYFV 253
LL I QL+I S+ F +C M Y PFLE+ ++
Sbjct: 626 LLSINQLKIVVGSLFMFTICNLLMYYLYGSPFLEHTYL 663
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 367 NVFIIDSTAPNSFHRGFH 314
N F++ S PNS+H GFH
Sbjct: 531 NEFLVVS--PNSYHMGFH 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,853
Number of Sequences: 5004
Number of extensions: 22577
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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