Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J03
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    26   0.16 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   KNVINTIKTAVKILNGGKITKTNKK 80
           KNV  T+   V+I+ GG +T  N K
Sbjct: 193 KNVNQTVAETVRIIYGGSVTAGNAK 217


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 220 SLNHPRYRQ 194
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 220 SLNHPRYRQ 194
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 100 IKYINSNFLFVLVILPPFKIFTAVLMV 20
           I++I + +L  L+   PF I+T V +V
Sbjct: 159 IRFILAAWLIALISAIPFAIYTKVNLV 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,143
Number of Sequences: 438
Number of extensions: 1554
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)