Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J02
(539 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5 prot... 23 1.3
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 23 2.3
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 22 4.0
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 6.9
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 21 9.2
>AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5
protein.
Length = 533
Score = 23.4 bits (48), Expect = 1.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 131 NVSGSWRGLATQHSRVNTRPRN 66
++ G+W G A HS + RP +
Sbjct: 215 DLRGNWAGFADSHSPLYKRPHD 236
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 260
DG +L V+ +G D+ I G L MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 260
DG +L V+ +G D+ I G L MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 260
DG +L V+ +G D+ I G L MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 260
DG +L V+ +G D+ I G L MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 260
DG +L V+ +G D+ I G L MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 22.6 bits (46), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 126 DVEKILSSVGIEADGEKLKKVITELNGKDVEQL 224
DVE++LS + A GE+ + + ++V+QL
Sbjct: 329 DVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 21.8 bits (44), Expect = 4.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 271 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPS 164
P P + F R IS + P S + S SPS
Sbjct: 172 PSPASDSECFDRRKFISALVNAPSVSPASLPSISPS 207
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 21.0 bits (42), Expect = 6.9
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 256 IDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELR----IFSTSAAAGVVLP 101
+D + ++ +T++ ++ SPSAS+P ++ F+T+ V LP
Sbjct: 1272 LDSNLKYEFWVTAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLP 1327
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 127 SAAAGVVLPPSTA 89
+AAA +LPP TA
Sbjct: 131 AAAAAALLPPQTA 143
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,015
Number of Sequences: 336
Number of extensions: 1223
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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