Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J02
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    82   6e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    79   3e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    77   1e-15
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.4  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 81.8 bits (193), Expect = 6e-17
 Identities = 33/58 (56%), Positives = 51/58 (87%)
 Frame = +3

Query: 96  LGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
           +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P GG
Sbjct: 12  VGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 33/58 (56%), Positives = 51/58 (87%)
 Frame = +3

Query: 96  LGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
           +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P  G
Sbjct: 12  VGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 31/58 (53%), Positives = 51/58 (87%)
 Frame = +3

Query: 96  LGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
           +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P GG
Sbjct: 12  VGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 271 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 104
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 103 PPS 95
           P S
Sbjct: 246 PTS 248


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 247 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAE*IRGHV 68
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+  I    
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510

Query: 67  THFLSPN 47
               SPN
Sbjct: 511 KPARSPN 517


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 199 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTA 89
           SSV T LS S S+SIP  +     STS ++  V+P S++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSS 46


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 166 SASIPTELRIFSTSAAAGVVLPPSTAE*IRGHVTHFLSPN*HETCNA-ERITFV 8
           S  +   LR+F  +     V P   AE +R H+++ +S +   T +A E + +V
Sbjct: 715 STRVSVLLRLFKLAFMTVNVFPEKNAEVLRPHISYIISTSLELTTDAVEPLNYV 768


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 397 TKLYKSTRRWSLFQFMF 447
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 214 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 89
           T LP ++V T  SFS SAS  T     +++    +V PPST+
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = -2

Query: 268 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 107
           PPTG   S S P         + STS+P+    T  + + S+ +PT     STS      
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234

Query: 106 LPPSTAE*IRGHVTHFLSP 50
           +P   +  +   +T  + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,083
Number of Sequences: 5004
Number of extensions: 22440
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)