Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J02
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 81 7e-16
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 67 7e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 66 2e-11
07_01_1001 - 8460467-8460799 50 2e-06
07_03_0321 + 16757414-16757743 48 6e-06
01_06_0127 - 26718452-26718989,26719082-26720211 33 0.15
01_06_0098 - 26416768-26416998 31 0.44
12_01_0140 - 1088400-1088843 30 1.4
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 29 1.8
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 2.4
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 4.1
04_01_0507 - 6628316-6628347,6629667-6630087,6630649-6630684 28 4.1
12_01_0090 + 717524-719080 28 5.5
10_08_0183 - 15522241-15523866 28 5.5
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 28 5.5
12_01_0141 - 1091579-1091983 27 7.2
11_05_0087 + 18970741-18972702 27 7.2
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 27 9.6
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152 27 9.6
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 80.6 bits (190), Expect = 7e-16
Identities = 35/61 (57%), Positives = 51/61 (83%)
Frame = +3
Query: 90 AVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
AVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GG
Sbjct: 10 AVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGG 69
Query: 270 G 272
G
Sbjct: 70 G 70
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 67.3 bits (157), Expect = 7e-12
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = +3
Query: 90 AVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P GG
Sbjct: 10 AYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGG 69
Query: 270 G 272
G
Sbjct: 70 G 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/61 (47%), Positives = 43/61 (70%)
Frame = +3
Query: 90 AVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 269
A L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P GG
Sbjct: 203 ATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGG 262
Query: 270 G 272
G
Sbjct: 263 G 263
>07_01_1001 - 8460467-8460799
Length = 110
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 90 AVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 266
A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 10 ATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 90 AVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 251
A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 10 ATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0127 - 26718452-26718989,26719082-26720211
Length = 555
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 84 YSAVLGGKTTPAAADVEKILSSVGIEADGEKLKK 185
Y+A++ G AA D++K+L S+ IEA+ EKL K
Sbjct: 249 YTAIIDGNAKQAANDMQKVL-SIEIEAEQEKLAK 281
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 114 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 212
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_01_0140 - 1088400-1088843
Length = 147
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 81 IYSAVLGGKTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 230
+ SA KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 17 LVSAAKKKKTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 87 SAVLGGKTTPAAADVEKILSSVGIEADGEKLK 182
SA+L GK TP D+E+ L + G GE++K
Sbjct: 13 SALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 105 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 230
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 165 DGEKLKKVITELNGKDVEQLIA 230
DG+K+KKV+ L ++VE+L++
Sbjct: 36 DGKKMKKVVKRLGKEEVERLLS 57
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 209 LAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLATQHSRVNTR 75
L EL DY LK VS + G N++ WR + ++N R
Sbjct: 1035 LCEELLDYILKNHQVSQEPKGILHAFNIALCWRAASLLKHKINRR 1079
>04_01_0507 - 6628316-6628347,6629667-6630087,6630649-6630684
Length = 162
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 72 WPRIYSAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGK 209
W R + V G + P A VE++ + ADG K ++E+ G+
Sbjct: 14 WERKHDVVAGVVSHPVARRVEELRVAAIKSADGPSSDKEVSEMEGE 59
>12_01_0090 + 717524-719080
Length = 518
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 268 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIF 134
PP + S P ++ S+S SS + + + S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>10_08_0183 - 15522241-15523866
Length = 541
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 84 YSAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVIT 194
Y+A++ AAAD+ K+L V I+ + +KL++++T
Sbjct: 246 YTALVAKNAKQAAADMSKVL-QVEIQEEQDKLEQMVT 281
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 119 SWRGLATQHSRVNTRPRNAFFK 54
SW+GL ++S+ N RP FF+
Sbjct: 863 SWKGLIDRYSQANLRPEILFFE 884
>12_01_0141 - 1091579-1091983
Length = 134
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 159 EADGEKLKKVITELNGKDVEQLIA 230
E DG+K KKV+ L ++VE+L++
Sbjct: 30 EEDGKKRKKVVRRLGKEEVERLLS 53
>11_05_0087 + 18970741-18972702
Length = 653
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 72 WPRIYSAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL 200
W R + V G + PAA VE++ + ADG + +TE+
Sbjct: 205 WGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEM 247
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 271 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIP 152
PPP PAA+ S S+P S+V+ ++ PSA +P
Sbjct: 122 PPPEPTPTPAPAPAAVPPSASVP-STVVPPVAAPPSALLP 160
>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
Length = 205
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 181 LSFSPSASIPTELRI--FSTSAAAGVVLPPSTAE*IR 77
LS+SPSAS T+L I + + A V PPS++ +R
Sbjct: 114 LSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLR 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,255
Number of Sequences: 37544
Number of extensions: 168226
Number of successful extensions: 538
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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