Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J01
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 143 9e-35
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.047
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.8
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.8
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 2.3
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 2.3
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 29 3.1
U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 4.1
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 4.1
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 5.4
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 7.2
U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 9.5
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 9.5
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 9.5
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 9.5
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 9.5
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 9.5
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 9.5
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 143 bits (346), Expect = 9e-35
Identities = 71/135 (52%), Positives = 89/135 (65%), Gaps = 1/135 (0%)
Frame = +2
Query: 41 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 217
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 218 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 397
AENCDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 398 DFGEETPALDVLKDY 442
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 152 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 319
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 247 LVCSFITVLSQNT*YCLPLVKSFSGFVK 164
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 247 LVCSFITVLSQNT*YCLPLVKSFSGFVK 164
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 158 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 319
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 158 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 319
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 269 NEHQIPLVKVDNNKKLGEWAGLCK 340
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 159 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 16
C PW IK +T C S+L P + GLVG T+ +++ LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377
>U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical
protein C07G1.2 protein.
Length = 635
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = +3
Query: 87 VTTWT*M*HCKRC*RQL*SMVVLCTVFTKPLK----LLTRGKQYYVFWLRTVMKLHTRNL 254
+ WT + H + C R+ +++C F+ K LLT Q + R + L+ R
Sbjct: 368 IEVWTFIPHVQGCARKCRESLLMCEAFSYEPKSQTCLLTDTSQTFSSLARKITSLYYRRR 427
Query: 255 FRLCATNIRFHLSRLTTTKSLENGLV 332
F + L TKS + G V
Sbjct: 428 FSTKDVEFQVENKVLYATKSAKKGHV 453
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 170 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 334
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 146 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 253
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 101 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 244
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 332 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 439
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 74 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 187
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical
protein F18E9.6 protein.
Length = 91
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 225 TVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 383
T M L T+ L + T +R LTT GL RLT + + S P
Sbjct: 14 TTMDLTTKGLSTMGLTTMRLTTMDLTTKGLSTMGLTRMRLTTIGLYNRTSGGP 66
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 267 ATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 431
+T+ RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 32 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 196
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,112
Number of Sequences: 27780
Number of extensions: 250053
Number of successful extensions: 750
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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