Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I24
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 320 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 433
           G AG P + M      +++    R +  FA P T T V
Sbjct: 8   GNAGAPPQEMPTWFVRWLNSQQPRNVPNFAAPSTSTAV 45


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
 Frame = +1

Query: 67  VHTKLILCI------TVFFIC--YFYCEI*LXAKHLIXL 159
           VH   +LCI        F +C  YFYC   +   HL+ L
Sbjct: 125 VHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFL 163


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 555 LVWTSTLNSHLKHYXNV 605
           LV + TLN HL+H   V
Sbjct: 462 LVASETLNEHLEHLRQV 478


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 567 STLNSHLKHYXNV 605
           S LNSH+K + NV
Sbjct: 272 SMLNSHMKSHSNV 284


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 567 STLNSHLKHYXNV 605
           S LNSH+K + NV
Sbjct: 30  SMLNSHMKSHSNV 42


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 85  LCITVFFICY 114
           +CIT F+ CY
Sbjct: 246 ICITQFYYCY 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,861
Number of Sequences: 336
Number of extensions: 2967
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)