Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I24
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 240 7e-64
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 240 7e-64
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 90 1e-18
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 69 2e-12
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 49 3e-06
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 48 5e-06
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 46 2e-05
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 42 3e-04
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 35 0.062
03_06_0131 - 31900700-31900992,31901039-31901720 30 1.3
03_02_0004 - 4869853-4871106 29 2.3
02_05_0376 + 28406547-28406870 28 5.4
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 28 5.4
05_01_0601 + 5390484-5391692 28 7.1
01_06_1172 - 35115248-35115874 28 7.1
08_01_0079 - 554936-554977,555108-555297,555384-555430,556039-55... 27 9.4
02_03_0335 + 17882461-17882527,17882616-17884723 27 9.4
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 27 9.4
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 240 bits (587), Expect = 7e-64
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = +2
Query: 272 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 451
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 452 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDPI 631
VFQ MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVV+DPI
Sbjct: 87 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPI 146
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 240 bits (587), Expect = 7e-64
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = +2
Query: 272 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 451
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 452 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDPI 631
VFQ MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVV+DPI
Sbjct: 87 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPI 146
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 90.2 bits (214), Expect = 1e-18
Identities = 59/142 (41%), Positives = 77/142 (54%), Gaps = 27/142 (19%)
Frame = +2
Query: 284 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTG--TGVSVEAVDPV 457
IS+LALLKM+ H RAG +EVMGLM G+ D V V+D FA+P G T V+ +A
Sbjct: 54 ISALALLKMVVHARAGGTIEVMGLMQGKCEGDAIV-VMDAFALPVEGTETRVNAQADAYE 112
Query: 458 FQAKMLDMLKQ-------------------------TGRPEMVVGWYHSHPGFGCWLSGV 562
+ + + KQ GR E VVGWYHSHPG+GCWLSG+
Sbjct: 113 YMVEYSTINKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLSGI 172
Query: 563 DINTQQSFEALSXRAVAVVVDP 628
D++TQ + +AVV+DP
Sbjct: 173 DVSTQMLNQQFQEPFLAVVIDP 194
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +2
Query: 272 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQ-TGTGVSVEAV 448
+ Y+S LALLK+L H P+ MG++LGE VD ++VRV+D F +P+ G G +A+
Sbjct: 24 QTAYVSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLPRCAGGGAFTQAI 83
Query: 449 DPVFQAKMLDMLKQTGR 499
DP + ML ML +T R
Sbjct: 84 DPRYIEGMLAMLNKTDR 100
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 503 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDPI 631
E VVGWY S+PGF S D ++FE L+ RA+ V VDP+
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPV 205
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +2
Query: 338 MEVMGLMLGEFVDDYTVRVI---DVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 508
+E G++ G D V+ D+ Q T S EA + + ++LD+ +Q G P
Sbjct: 297 LETCGIIAGTLRVDMDVKYFIATDLIIPKQESTSYSREATN---EEEILDIFEQLGSPSH 353
Query: 509 VVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDP 628
+ GW H+HP C++S VD++ S + A A+VV P
Sbjct: 354 L-GWIHTHPTQECFMSSVDLHNHYSNQKDLREAFAIVVAP 392
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 48.4 bits (110), Expect = 5e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = +2
Query: 329 GVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 508
G +E G+ LG D T V + Q T S +AV +L +Q+ P
Sbjct: 373 GNNVETCGI-LGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILS--EQSLYP-- 427
Query: 509 VVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDP 628
GW H+HP C+LS +D++TQ S++ + AVA+V+ P
Sbjct: 428 -AGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAP 466
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 46.0 bits (104), Expect = 2e-05
Identities = 33/117 (28%), Positives = 52/117 (44%)
Frame = +2
Query: 278 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPV 457
V + LA+LK++KH P V G +LG V + V + F P +A
Sbjct: 35 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPMREDDEEADADGAN 93
Query: 458 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDP 628
+Q +M+ L++ VGWY S G + + I T +++ R V +V DP
Sbjct: 94 YQLEMMRCLREVNVDNNTVGWYQSCL-LGSFQTVELIETFMNYQENIRRCVCIVYDP 149
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 42.3 bits (95), Expect = 3e-04
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 512 VGWYHSHPGFGCWLSGVDINTQQSFEALSXRAVAVVVDP 628
+GW H+HP C+LS +D++ S++ + A+A+V+ P
Sbjct: 439 LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAP 477
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 34.7 bits (76), Expect = 0.062
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +2
Query: 338 MEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVG 517
+E G++ G + T V + Q T S EA + + ++ D+ Q +G
Sbjct: 335 LETCGVLAGT-LKKRTFYVTALIIPKQKSTSDSCEATN---EDELFDV--QDKGSLFTLG 388
Query: 518 WYHSHPGFGCWLSGVDINTQQSFE 589
W H+HP C+LS +D++ S++
Sbjct: 389 WIHTHPTQSCFLSSIDLHNHYSYQ 412
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 508 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWH 410
HFG LF+ Q+ S +D INSL +SP L H
Sbjct: 205 HFGGQPLFRLSQNSSAKDIINSLAALTSPVLPH 237
>03_02_0004 - 4869853-4871106
Length = 417
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 422 GTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSX 601
G G++ + ML K T R YH G+GC + GV +N Q FE +
Sbjct: 302 GLGIAAATAGSLQTLAMLFRPKTTNRYRKYWKSYHHLVGYGCVVVGV-VNVFQGFEVMGL 360
Query: 602 RA 607
A
Sbjct: 361 GA 362
>02_05_0376 + 28406547-28406870
Length = 107
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 550 PTTKARM*MIPSNNHFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNC 383
P+ KA + P N+H G++ + + W + Y+ P L S + ++S+C
Sbjct: 6 PSCKATICRTPGNHHHGTTSELRAASRRASSLWEEMVLPYNFPPLSPSYFPSSSSC 61
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 481 HVQHLSLEDWINSLYRYSSPG 419
H+++LSL + +N Y+YSS G
Sbjct: 151 HIENLSLSELLNGTYKYSSLG 171
>05_01_0601 + 5390484-5391692
Length = 402
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 539 FGCWLSGVDINTQQS--FEALSXRAVAVVVDP 628
FG W++G ++ QS +EAL AVV DP
Sbjct: 23 FGVWINGAASSSPQSQEYEALQALKAAVVEDP 54
>01_06_1172 - 35115248-35115874
Length = 208
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 320 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 451
G EV + LGEF D VRV +P+ G G V VD
Sbjct: 115 GSPAAAAEVCAICLGEFADGEKVRV-----LPRCGHGFHVRCVD 153
>08_01_0079 -
554936-554977,555108-555297,555384-555430,556039-556139,
556223-556271,556432-556494,556602-556695,556822-556924,
557719-557791,557872-557984,558068-558149,558386-558913,
559015-559098,560156-560305,561021-561191,561759-561809,
562601-562738,562823-562894,563236-563391,563681-563839,
564080-564180,564577-564829
Length = 939
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -1
Query: 513 TTISGRPVCFNMSNIL---AWKTGSTASTDTPVPVCGIANT 400
++ISG N+++++ + +TG++ + DT +P C + N+
Sbjct: 508 SSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALENS 548
>02_03_0335 + 17882461-17882527,17882616-17884723
Length = 724
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 523 IPSNNHFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHS 407
+P+ H +S +F+ HL+LED++++ S GLW +
Sbjct: 116 MPNALHASTSDIFEATAHLALEDFLHA----SIKGLWET 150
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 253 SSSGHRGASVHLFPSTP-*NAETWT 324
SSSG A+ HLF S+P NA TWT
Sbjct: 85 SSSGDLPAAQHLFLSSPHRNATTWT 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,770
Number of Sequences: 37544
Number of extensions: 321548
Number of successful extensions: 778
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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