Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I24
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   5.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 519 HPTTISGRPVCFN 481
           HPT I  + VCFN
Sbjct: 72  HPTIIMPQDVCFN 84


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -2

Query: 239 VAPVISPPFHHQDEEDDPFQFL 174
           + P + PP HH   +    Q L
Sbjct: 343 MGPTMGPPHHHHHHQTQSLQHL 364


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 567 STLNSHLKHYXNV 605
           S LNSHLK + NV
Sbjct: 30  SMLNSHLKSHSNV 42


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 430 SSPGLWHSKYINNSNCIVIYKLSEHETHNLHRN 332
           +S G     +   S+C   Y+ S HE  N +RN
Sbjct: 215 NSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 433
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 68  AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 100


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 433
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 121 AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 153


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 480 C*NKQDDPKWLLDG 521
           C  K D PK LLDG
Sbjct: 43  CSKKNDTPKELLDG 56


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 480 C*NKQDDPKWLLDG 521
           C  K D PK LLDG
Sbjct: 17  CSKKNDTPKELLDG 30


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 526 FTSWLWLLVIWCGH 567
           F  WL +L +W  H
Sbjct: 651 FPKWLQVLALWLNH 664


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 391 SNCIVIYKLSEHETHNLHRN 332
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 391 SNCIVIYKLSEHETHNLHRN 332
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 391 SNCIVIYKLSEHETHNLHRN 332
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 391 SNCIVIYKLSEHETHNLHRN 332
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 478 HVETNRTTRNGCWMVSFTSWLW 543
           +V TN+T   G  +  +  W W
Sbjct: 89  NVITNKTGNGGPLLAPYPDWTW 110


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 391 SNCIVIYKLSEHETHNLHRN 332
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 348 WVSCSESL*MTIQFELLMYLLCHK 419
           W+S  ++  M    EL+M +LC K
Sbjct: 81  WISPGDTKVMVEHGELVMGILCKK 104


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 218 PFHHQDEEDDPFQFLPLNFH 159
           P+H   +ED      P  FH
Sbjct: 391 PYHPSTQEDSEEHLTPKRFH 410


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 218 PFHHQDEEDDPFQFLPLNFH 159
           P+H   +ED      P  FH
Sbjct: 391 PYHPSTQEDSEEHLTPKRFH 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,587
Number of Sequences: 438
Number of extensions: 3337
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)