Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I19
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       29   1.5  
06_01_0900 + 6926600-6927202                                           28   2.6  
01_01_0017 + 133311-133615,133698-133824,133912-134253                 27   4.5  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 44  NVFTKGYFVTLLIFIYIIYYRGVCIEXASECVGCTCAREHRRDTPPTSAPHTRTCT 211
           N++++GY  +       ++ RG+       C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGLS---CGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 191 VRRWGACLGGARARTCIRRTRSHXRYILHG 102
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 125 ASECVGCTCAREHRRDTPPTSAPHTRT 205
           +S      C +   R+ PP  APHT T
Sbjct: 7   SSTASAAACCKSRSRNPPPAPAPHTST 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,999,254
Number of Sequences: 37544
Number of extensions: 103975
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)