Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I19
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   7.1  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 261 FYDN--DIALLDVKWRVRGVHVRVCGAEVGGVSRRCSRAHVHPTHSLAXSIHT-PR 103
           FY+   D+A+ D   +++  HVR   A   G+  +  R H HP  +++   HT PR
Sbjct: 122 FYEEVKDLAICDAMAQLQQDHVREITARHNGIIEKQQRIH-HPPGTVSGGTHTLPR 176


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 128 SECV-GCTCAREHRRDTPPTSAPHTRTC 208
           ++C+ GCTC   ++RD+      H+R C
Sbjct: 487 AKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 128 SECV-GCTCAREHRRDTPPTSAPHTRTC 208
           ++C+ GCTC   ++RD+      H+R C
Sbjct: 487 AKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 38  GSNVFTKGYFVTLLIFIYIIYYRGVCIEXASECVGCTCAREHRRDTP 178
           GS++ + G F      +Y I Y GV ++  +   GC   RE     P
Sbjct: 59  GSDMCSNGTFCLKRAKVYQIGYSGVNLKWTTYTKGCATLREDNDQIP 105


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 100 INNINKYQQRYKIAFRKNIRSXKVYIFLFGLQI 2
           I NIN     +K A  KN+ S ++++FL G Q+
Sbjct: 184 ITNINLLPM-FKAAREKNLISDEIHVFLAGTQV 215


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 264 IFYDNDIALLDVKWRVRGVHVRVCGAEVG 178
           +F+   I++  VKW +  VH+  C  ++G
Sbjct: 40  VFFKTPISMQSVKWSMMNVHLFSCLLDLG 68


>U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical
           protein F28A12.3 protein.
          Length = 160

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 38  GSNVFTKGYFVTLLIFIYIIYYRGVCIEXASECVGCTCAREHRRDTP 178
           G++V T G F      I+ + +  +  +  S   GC   RE    TP
Sbjct: 61  GADVCTNGTFCIKRAKIHRVGFNSINFKWTSYTKGCASVREDNNQTP 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,283,446
Number of Sequences: 27780
Number of extensions: 86110
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)