Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I18
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.38 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    27   4.7  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    26   6.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   8.1  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   8.1  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 598 KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLN 777
           KH N   S  QK  EW R   N  +++ IN+   D +   Q   HD  +  +   M TL 
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTK---QPKMHDFRQPLHPNPMTTLK 765

Query: 778 FEDAQNSVNLLNSAI 822
            +   NS +   S +
Sbjct: 766 RKGQHNSFSYDKSTL 780


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 649 RVNTNTIELAKINAIIVDKQRLPQQDFHDN---AKTYYETDMITLNFEDAQNSVNLLN 813
           R N+N  E+ ++NAI++D +   Q  F  N    + Y   D +    E+ + + +L+N
Sbjct: 254 RPNSNPFEVCELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLIN 311


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +1

Query: 568 QINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKT 747
           ++ H  + Q       R++F K   WL    NT+  +K +   + K      +  ++ KT
Sbjct: 78  KLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKES---LQKDEAEYVELANSLKT 134

Query: 748 YYETDM 765
             ET++
Sbjct: 135 KVETNI 140


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +1

Query: 526 LAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVD- 702
           +A++ E         +     L   + NV +   + +   + +NT  +ELA +N  +V  
Sbjct: 535 MAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQ 594

Query: 703 -KQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISN 828
            + R+P ++  +   T      IT + ++  +S+N L +  SN
Sbjct: 595 IQHRVPPENQSNLEHT------ITTSSKNTTSSINPLTAVSSN 631


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 424 EKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHA 582
           EKIG F  ++   T+N   S+G  I+    ++ ++ V     SG  R +   A
Sbjct: 114 EKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGENRLEYRRA 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,009
Number of Sequences: 5004
Number of extensions: 69409
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)