Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I18
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 35 0.075
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 33 0.23
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 30 2.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 30 2.8
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 4.9
09_03_0112 - 12448874-12449398 28 8.6
04_04_0619 + 26652923-26653267,26653440-26654273 28 8.6
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.1 bits (77), Expect = 0.075
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Frame = +1
Query: 490 NLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTI 669
N I+SP++ LA++A+GA G T+R++ L + RS ++ LR NT
Sbjct: 60 NFIVSPLSFHAALALVADGARGETQRELLGFLG-SPSLAELHRSPTTRLVARLRHLPNT- 117
Query: 670 ELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNF-EDAQNSVNLLNSAISNFTHG 840
+ + VD+ R +F D A + Y +F + + +N+ +S+ T G
Sbjct: 118 --SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 340 LKFLVLAIVPLSFAQNIPKATN--LHNGLTEKIGNFSIELLYHTSNLEQSKGN 492
++FL I+P FA N+ K TN L L KIG+++I +L T E GN
Sbjct: 610 IQFLHGGIIPGLFANNL-KITNILLDQNLVAKIGSYNIPILSETMKSEGGSGN 661
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 576 IDLPSRIPRRAFSYYRQNSPNGDW 505
+ LP +P+R F Y R GDW
Sbjct: 677 VRLPGTLPQRVFDYLRDEQRRGDW 700
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 532 VIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRV-NTNTIELAKINAIIVDKQ 708
++ GN I + L H + T+S Q S LRV N + +A ++ +Q
Sbjct: 287 ILQPALGGNANTAIICNITLAQVHADETKSSLQFASRALRVTNCACVNEILTDAALLKRQ 346
Query: 709 RLPQQDFHDNAKTYYETDMITLNFEDAQNS 798
R ++ ++ E + I+L E+ + +
Sbjct: 347 RKEIEELRAKLRSELEKERISLELEEEKKA 376
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 484 KGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTN 663
KG L+ T W I E R ++NH L ++ ++ E +K +E LRV
Sbjct: 462 KGPLVKQD-TEWAKQLSIKEDEITMLREKLNHVLNIENLGSDAVYLELEKENELLRVKIQ 520
Query: 664 TIE 672
+E
Sbjct: 521 ELE 523
>09_03_0112 - 12448874-12449398
Length = 174
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 578 TRYGYKQSIRTSLEANSKKSQNGSESTRTQ*NSPKSMPLLSISNVCHNKTFMTMQR 745
TRY +K S+ SK G E T+ K+ ++IS C+N++ TM+R
Sbjct: 71 TRYPFKLDCM-SVGGTSKPFFRGMEVTKISLADGKAWMKMNISQNCYNQSTGTMER 125
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 28.3 bits (60), Expect = 8.6
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Frame = +1
Query: 484 KGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTN 663
+ N + SP+ + LA++A G G T RQ+ L ++H + + + +R
Sbjct: 19 QSNFMFSPLGLRAGLALLATGTDGETLRQL--LAFLGSQHIHQLNAASAGLLAEMRA--- 73
Query: 664 TIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNL-LNSAISNFTHG 840
+L+ I VD+ + +F A + +++F++ N+ +N IS T+G
Sbjct: 74 WPQLSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNG 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,111,511
Number of Sequences: 37544
Number of extensions: 409749
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -