Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I14
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 184 1e-47
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 105 8e-24
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 105 8e-24
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 89 7e-19
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 87 4e-18
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 81 3e-16
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 79 8e-16
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 76 5e-15
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 73 4e-14
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 73 7e-14
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 73 7e-14
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 72 9e-14
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 71 2e-13
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 71 3e-13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 67 2e-12
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 63 5e-11
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 62 9e-11
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 60 5e-10
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 59 7e-10
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 51 2e-07
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 39 8e-04
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 36 0.005
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.26
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.26
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 31 0.26
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.46
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.61
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 1.9
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.5
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.5
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 3.3
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 7.5
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 7.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 7.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 7.5
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 7.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 7.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 10.0
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 10.0
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 10.0
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 184 bits (449), Expect = 1e-47
Identities = 99/220 (45%), Positives = 131/220 (59%), Gaps = 2/220 (0%)
Frame = +2
Query: 143 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 322
M++ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IR+K
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 323 CLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LQGKLEGAI 496
++YLDRA L+ L AI
Sbjct: 60 VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119
Query: 497 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLA 676
+VEKP+V+W D+AG V+LPIK P LF+ R PW GILL+GPPGTGKSYLA
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLA 179
Query: 677 KAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
KAVATEA STFFS+SSSDLVSKW+GESE+LV+ LF++AR
Sbjct: 180 KAVATEA-GSTFFSISSSDLVSKWMGESERLVRQLFEMAR 218
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 105 bits (252), Expect = 8e-24
Identities = 54/104 (51%), Positives = 69/104 (66%)
Frame = +2
Query: 494 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 673
IVV V W D++G V+ P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 449 IVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPARGMLLFGPPGTGKTML 508
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARHIN 805
A+AVATE + S FFS+S+S L SK+LGESEKLV+ LF LA+ ++
Sbjct: 509 ARAVATE-SRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLS 551
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 105 bits (252), Expect = 8e-24
Identities = 54/101 (53%), Positives = 69/101 (68%)
Frame = +2
Query: 494 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 673
I+ V WSD+AG VI P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 369 IISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPPGTGKTML 428
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
A+AVATEA +TFFS+S+S L SK+LG+SEKLV+ LF++A+
Sbjct: 429 ARAVATEA-KATFFSISASSLTSKYLGDSEKLVRALFEVAK 468
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 89.0 bits (211), Expect = 7e-19
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +2
Query: 497 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 673
VVE P+V+W D+ G V +P+ + F + P KG+L FGPPGTGK+ L
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
AKA+A E ++ F SV +L+S W GESE V+++FD AR
Sbjct: 548 AKAIANEC-SANFISVKGPELLSMWFGESESNVRDIFDKAR 587
Score = 68.1 bits (159), Expect = 1e-12
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 691
V + D+ G V LP++ P LF I P +GIL++GPPGTGK+ +A+AVA
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280
Query: 692 EANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLA 793
E + FF ++ +++SK GESE ++ F+ A
Sbjct: 281 E-TGAFFFLINGPEIMSKMAGESESNLRKAFEEA 313
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 86.6 bits (205), Expect = 4e-18
Identities = 42/97 (43%), Positives = 61/97 (62%)
Frame = +2
Query: 509 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 688
P V W D+ G + LP++FP LF+ P G+LL+GPPGTGK+ LAKAVA
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA 709
Query: 689 TEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARH 799
TE + F S+ +L++ ++GESE V+N+F+ AR+
Sbjct: 710 TEL-SLEFVSIKGPELLNMYVGESEANVRNVFEKARN 745
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 80.6 bits (190), Expect = 3e-16
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +2
Query: 497 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 673
V EKP V + DV G V LP+ P F I P KGI+L+GPPGTGK+
Sbjct: 170 VEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLC 229
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
A+AVA ++TF V S+LV K++GE ++V+ LF++AR
Sbjct: 230 ARAVANR-TDATFIRVIGSELVQKYVGEGARMVRELFEMAR 269
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 79.0 bits (186), Expect = 8e-16
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = +2
Query: 482 LEGAIVVEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPG 655
L ++VEK P + V G + LP+K P LF IP KGILL+GPPG
Sbjct: 130 LVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
Query: 656 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
TGK+ LA+AVA + F VS S+LV K++GE ++V+ LF +AR
Sbjct: 190 TGKTLLARAVA-HHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAR 235
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 76.2 bits (179), Expect = 5e-15
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT---GKRIPWKGILLFGPPGTGKSYLAKAV 685
V + D+ G V+ P+K+P +F G KG+LL+GPPG GK+ LAKA+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 686 ATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARHI 802
A + + +TF +VS L KW GES KLV LF LAR +
Sbjct: 146 AKQ-SQATFINVSVGLLTDKWFGESNKLVDALFTLARKL 183
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 73.3 bits (172), Expect = 4e-14
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +2
Query: 497 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 673
V EKP ++SD+ G ++LP++ F + P KG L+FGPPGTGK+ L
Sbjct: 176 VDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARHINXA 811
A+A A + +N+TF +++ LV ++G+ KLV++ F LA+ + A
Sbjct: 236 ARACAAQ-SNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPA 280
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 72.5 bits (170), Expect = 7e-14
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +2
Query: 509 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 685
P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ LAKAV
Sbjct: 186 PTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245
Query: 686 ATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLA 793
A + ++TF V S+L+ K+LG+ +LV+ LF+ A
Sbjct: 246 ANQ-TSATFLRVVGSELIQKYLGDGPRLVRQLFNAA 280
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 72.5 bits (170), Expect = 7e-14
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +2
Query: 497 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 673
++E P+V WSD+ G V P+ F+ + P KG+LL+GPPG K+
Sbjct: 539 MMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTIT 598
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
AKA+ATE F +V +L K++GESE+ V+ +F AR
Sbjct: 599 AKAIATE-TGLNFIAVKGPELFDKFVGESERAVRQVFQKAR 638
Score = 68.9 bits (161), Expect = 8e-13
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 691
V +S + G V LP + P LF I P +G+LL+GPPGTGK+ + +AVA
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 692 EANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
EA N+ F++ +V K+LGE+E ++ +F+ AR
Sbjct: 336 EA-NAQVFTIDGPSVVGKYLGETESRLRKIFEDAR 369
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 72.1 bits (169), Expect = 9e-14
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 479 KLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPG 655
K EG V P V W+++ ++ PIK P L+ I G+LL+GPPG
Sbjct: 479 KREGFATV--PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPG 536
Query: 656 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
GK+ LAKAVA E+ + F S+ +L++K++GESE+ V+ +F AR
Sbjct: 537 CGKTLLAKAVANESK-ANFISIRGPELLNKYVGESERAVRQVFLRAR 582
Score = 66.1 bits (154), Expect = 6e-12
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 691
+ SD+ G V +PIK P ++ I P +G+LL GPPG GK+ LA A+A
Sbjct: 171 ISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALAN 230
Query: 692 EANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARHI 802
E F S+S+ +VS GESEK V+ +F+ A+ +
Sbjct: 231 EL-GVPFISISAPSIVSGMSGESEKKVREVFEEAKSL 266
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 70.9 bits (166), Expect = 2e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Frame = +2
Query: 503 EKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 679
E+P V ++DV G V LP+ L+ I P +G+LL+GPPGTGK+ L K
Sbjct: 127 ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVK 186
Query: 680 AVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
AVA + + F V S+ V K+LGE ++V+++F +AR
Sbjct: 187 AVA-NSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMAR 224
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 70.5 bits (165), Expect = 3e-13
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +2
Query: 500 VEKP-HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 673
+E P + ++ V G + LP+K P LF I P KG+LL+GPPGTGK+ L
Sbjct: 123 IEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182
Query: 674 AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
A+AVA F V SS +V K++GES ++++ +F A+
Sbjct: 183 ARAVAASL-GVNFLKVVSSAIVDKYIGESARIIREMFGYAK 222
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Frame = +2
Query: 506 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKA 682
+ ++ ++ + G V+LP+ +P +F I P +G+L GPPGTGK+ +A+
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 683 VA----TEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLARHI 802
+A T+ +FF SD +SKW+GE+E+ ++ LF+ AR +
Sbjct: 426 LAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRV 469
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 62.9 bits (146), Expect = 5e-11
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA- 688
+ + V G V+LP+ +P +F + P +G+L GPPGTGK+ +A+A+A
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAA 322
Query: 689 ---TEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
+E +F+ +D +SKW+GE+E+ ++ LF+ A+
Sbjct: 323 ACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAK 361
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 62.1 bits (144), Expect = 9e-11
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +2
Query: 506 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPGTGKSYLAKA 682
K ++W D+AG + P+K+ ++ R+ GILLFG PG GK+YLA A
Sbjct: 600 KSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASA 659
Query: 683 VATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
+++ F S+ +L+ K++G+SE+ V++LF A+
Sbjct: 660 ISS-TFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQ 696
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 59.7 bits (138), Expect = 5e-10
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 515 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 688
+K++DVAG V +K P + G +IP +G +L GPPGTGK+ LAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIP-RGAILSGPPGTGKTLLAKATA 350
Query: 689 TEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
EA N F SVS S+ + ++G V++LF AR
Sbjct: 351 GEA-NVPFLSVSGSEFLEMFVGVGPSRVRDLFATAR 385
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 59.3 bits (137), Expect = 7e-10
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Frame = +2
Query: 512 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAV 685
+V++SDV G V ++ P FT G ++P +G+LL GPPGTGK+ LA+AV
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLP-RGVLLTGPPGTGKTMLARAV 320
Query: 686 ATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFDLAR 796
A EA N FF +S S ++G K V+ LF AR
Sbjct: 321 AGEA-NVPFFFMSGSQFDEMYVGVGAKRVRELFAAAR 356
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/53 (41%), Positives = 37/53 (69%)
Frame = +2
Query: 626 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLF 784
KGILL+GPPGTGK+ +A+ + N V+ ++++K++G+SE+ V+ LF
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLF 357
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +2
Query: 614 RIPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKLVKNL 781
RI + IL+ GPP TGK+ +A +A + T F ++S+S++ S + ++E L++ L
Sbjct: 62 RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQAL 118
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 599 LFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVSKWLGESEKLVK 775
L K+ KG+L G GTGK+ LA A+A E F + S++ S + ++E L++
Sbjct: 56 LIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALME 115
Query: 776 N 778
N
Sbjct: 116 N 116
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 617 IPWK-GILLFGPPGTGKSYLAKAVATE 694
IP++ G LL+GPPG+GK+ A+A E
Sbjct: 239 IPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 626 KGILLFGPPGTGKSYLAKAVATEANNSTF-FSV 721
K + L GPPG GK+ + K++A+ N F FSV
Sbjct: 572 KIMCLVGPPGVGKTSVGKSIASALNREFFRFSV 604
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 626 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 724
K +++FGP G GKS L K + + + FSVS
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVS 51
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.9 bits (64), Expect = 0.46
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 623 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 751
+K +LL GPPG GK+ A VA + +++SD SK L
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLVA-KLEGYDVLELNASDTRSKRL 450
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.5 bits (63), Expect = 0.61
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 632 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 727
+ + G G+GKS L AVA EA +F++SS
Sbjct: 382 VTVTGEKGSGKSNLLNAVADEARKFGYFAMSS 413
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 632 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 724
+ + GPPGTGKS L K++ + T ++
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQIT 107
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 635 LLFGPPGTGKSYLA-KAVATEANNS 706
++ GPPGTGKS++ KA+ T N+
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENT 414
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = -1
Query: 750 SHLETRSDDETEKNVELFASVATAFAKYDLPVPGGPNNKMPFHGILLPVNKCGNFIGKIT 571
S L+ SD+ + V AFA PN + F +L GNF+ + T
Sbjct: 415 SFLDNVSDELRGSTAQYITEVTNAFA---------PNKRWHFDTLLRVFKSAGNFVSEST 465
Query: 570 ASFNASLAASRP 535
S L AS P
Sbjct: 466 LSTFLRLIASAP 477
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 620 PWKGILLFGPPGTGKSYLAKAVAT 691
P L GP GTGK+ L KA+A+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 632 ILLFGPPGTGKSYLAKAVA--TEANN 703
I++ G PGTGK+ LA+ VA TE N
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELEN 36
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 632 ILLFGPPGTGKSYLAKAVATEAN----NSTFFSV 721
I+L G P TGKSY+ ++ N N FFSV
Sbjct: 146 IILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSV 179
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +2
Query: 632 ILLFGPPGTGKS-YLAKAVATEANNSTFFSVS---SSDLVSKWLGESEKLVK-NLFDLA 793
I+L GP GTGKS L + V + ++ +V +S ++S +G +K +K ++D A
Sbjct: 12 IVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 626 KGILLFGPPGTGKSYLAKAVATEANN 703
K ILL G PG GK+ L A+A E +
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGH 1585
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 413 FWIPRPLLVFSFDLF*DIPLIFQLYQDIEG-ILHEYFLLPFHL 288
+W + F F L IP++F L+ I G LH + + HL
Sbjct: 310 YWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 197 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 340
E+ N E+ L+ +Y F VK+ A + + S++ C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +2
Query: 620 PWKGI-LLFGPPGTGKSYLAKAVA 688
P+K + ++ GP G+GK+ +AKAV+
Sbjct: 12 PYKYVFVVIGPAGSGKTTMAKAVS 35
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 620 PWKGILLFGPPGTGKSYLAKAVA 688
P L GP G GK+ L KA+A
Sbjct: 531 PLASFLFLGPTGVGKTALTKALA 553
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 143 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 289
+TSS + KAI L TK+ + K N L + +E +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 188 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 313
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 783 NKFFTNFSDSPSHLETRSDDETEKNVELFASVATAFAKYDLPVPGGP 643
N FF++ D PS E + + T + + S +T +LP P
Sbjct: 299 NAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTSTDLPTSNLPSQNAP 345
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 644 GPPGTGKSYLAKAVATE 694
GP G+GKS LA A+ TE
Sbjct: 32 GPQGSGKSTLASALDTE 48
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 605 TGKRIPWKGILLFGPPGTGKSYLAKAVA 688
+ R+P +L +GPPGTGK+ A A
Sbjct: 52 SSNRVPH--MLFYGPPGTGKTSTILACA 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,229
Number of Sequences: 5004
Number of extensions: 53452
Number of successful extensions: 250
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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