Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I13
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   2.6  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    29   3.4  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    29   3.4  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RTCLDVNPNDSQHTCRVVELASNTAIA 434
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 465 CNKDNCNGAGSISFSLPLATFA 530
           C KD CNGAG +S    +A F+
Sbjct: 107 CGKDKCNGAGKVSTIFVVAMFS 128


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 743 FRWGQTYENELRFTINSLEFFSVSTRLG 660
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 743 FRWGQTYENELRFTINSLEFFSVSTRLG 660
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,172,937
Number of Sequences: 27780
Number of extensions: 389516
Number of successful extensions: 1034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)