Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I12
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 125 4e-29
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 124 1e-28
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 123 2e-28
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 78 1e-14
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 31 1.3
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 30 2.2
08_01_0089 - 646310-646397,646566-647932 29 3.9
11_06_0074 - 19821699-19823702 29 6.8
11_01_0311 + 2322511-2323527 29 6.8
04_03_0690 + 18751601-18753667 28 9.0
01_01_0104 + 780442-781273,782514-783424 28 9.0
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 125 bits (302), Expect = 4e-29
Identities = 65/144 (45%), Positives = 87/144 (60%)
Frame = +2
Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
VP+GGAK GI P E S ELE++TR FT ++ IG DVPAPDMGT + M+W
Sbjct: 95 AVPYGGAKGGIGCTPGELSRSELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAW 152
Query: 842 IADTYAKTVGFQDINAHACVXGKP 913
I D Y+K G ++ A V GKP
Sbjct: 153 ILDEYSKFHG----HSPAVVTGKP 172
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 124 bits (299), Expect = 1e-28
Identities = 64/144 (44%), Positives = 87/144 (60%)
Frame = +2
Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
+P+GGAK GI P E S ELE++TR FT ++ IG DVPAPDMGT + M+W
Sbjct: 95 AIPYGGAKGGIGCAPGELSTSELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAW 152
Query: 842 IADTYAKTVGFQDINAHACVXGKP 913
I D Y+K G ++ A V GKP
Sbjct: 153 ILDEYSKFHG----HSPAVVTGKP 172
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 123 bits (297), Expect = 2e-28
Identities = 63/144 (43%), Positives = 89/144 (61%)
Frame = +2
Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94
Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
++P+GGAK GI +P + S ELE++TR FT ++ IG DVPAPDMGT + M+W
Sbjct: 95 NIPYGGAKGGIGCSPGDLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAW 152
Query: 842 IADTYAKTVGFQDINAHACVXGKP 913
I D Y+K G+ + A V GKP
Sbjct: 153 ILDEYSKFHGY----SPAVVTGKP 172
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 77.8 bits (183), Expect = 1e-14
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 1/160 (0%)
Frame = +2
Query: 395 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 571
E + S P+ K + IL +L+EP + + P D G+ + G+R Q S P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278
Query: 572 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRF 751
+GG+RF +T K L+ T K A GGA G +PK SE E+ + + F
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSF 338
Query: 752 TLELAKKGFIGPGVDVPAPDMGTGERXMSWIADTYAKTVG 871
EL + ++GP D PA D+G G R M ++ Y + G
Sbjct: 339 MDELYR--YLGPDQDFPAEDVGVGPREMGYLFGQYRRLSG 376
>06_03_0810 - 24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 710 EYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSWIADTYAKTVGFQDINA 889
E S H L+K+T + + F+G ++V T E S + D Y TV +D +
Sbjct: 893 EPSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEEEVESCVLD-YLGTVYIKDTDE 951
Query: 890 HAC 898
AC
Sbjct: 952 RAC 954
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +2
Query: 338 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 517
H F + V ED + + + +E K+KV + E + ++ ++ + G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701
Query: 518 DYEMILGYRAQHSTHRTPTKGGIRFSTD 601
Y + + + S TPT G FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729
>08_01_0089 - 646310-646397,646566-647932
Length = 484
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 698 INPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSWIADTYAKTVG 871
I P+ EHE + L L +I GV +P P G GE + +A ++A+ +G
Sbjct: 16 IRPELPPEHETTVHLTPWDLPLLTAEYIQKGVLLPKPPTG-GEHLVKHLASSFARALG 72
>11_06_0074 - 19821699-19823702
Length = 667
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 701 NPKEYSEHELEKITRRFTLELAKKGF 778
N + ++EH++EKIT ++ + K GF
Sbjct: 27 NIRSFTEHDIEKITSNYSTLIGKGGF 52
>11_01_0311 + 2322511-2323527
Length = 338
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 642 PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSLVVSPL-NLPKKDSLGLAWMSPLLTWV 818
PSS R TC S+ S S P + +++++ +L+ +P L + + G + + P L++
Sbjct: 36 PSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQLRLTWGHSPLGPTLSFA 95
Query: 819 PA 824
P+
Sbjct: 96 PS 97
>04_03_0690 + 18751601-18753667
Length = 688
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 849 SAIQDIXRSPVPMSGAGTSTPGPMNP---FLASSRVKRR 742
S D+ SP+P SGAG + P P P F A+ R+ R+
Sbjct: 67 SITADLFPSPLPSSGAGPTPPPPPPPRGAFEAAERLIRQ 105
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 704 PKEYSEHELEKITRRFTLELAKKGF 778
P YS +++KITRRF +L + GF
Sbjct: 324 PTRYSFSDVKKITRRFKEQLGQGGF 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,527,846
Number of Sequences: 37544
Number of extensions: 558089
Number of successful extensions: 1459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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