Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I11
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 223 2e-59
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 0.83
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 1.1
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.9
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 27 2.5
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 4.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 7.7
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 223 bits (544), Expect = 2e-59
Identities = 103/148 (69%), Positives = 124/148 (83%)
Frame = +1
Query: 40 LHAPGQGLSQSALPXRRSVPPWLQLPADAVKAQIYKLGKQGLTPSQIGVMLRDSHGVAQV 219
+H+ G+G++ SALP RS P W + AD+V QI K K+G++PSQIGV LRDSHG+ QV
Sbjct: 4 MHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQV 63
Query: 220 XFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 399
F+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIH
Sbjct: 64 RFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIH 123
Query: 400 RLARYYKTKSVLPPNWKYESSTASALVA 483
RLARYY+ LPP WKYES+TASALVA
Sbjct: 124 RLARYYRKVGALPPTWKYESATASALVA 151
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 28.3 bits (60), Expect = 0.83
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 235 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 414
KK+ +KA G EDL +L + + + +++K RL ++ RI L R
Sbjct: 629 KKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRIDHLERA 688
Query: 415 YKTKSVLPPNWKYES 459
Y+ +++ P W+ ++
Sbjct: 689 YRREAI--PLWEEDA 701
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 328 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 429
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 235 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 414
KKI+ I L D YYL KKA + + N +K+SK I +E + +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241
Query: 415 YKTKSVLPPNW 447
+ L +W
Sbjct: 242 VNLEKYLTKSW 252
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 52 GQGLSQSALPXRRSVP--PWLQLPADAVKAQIYKLGKQG 162
GQ + + ALP SVP LQ+P + V+ + LGK G
Sbjct: 261 GQHVEEPALPSETSVPANSTLQVPTENVEVDV--LGKDG 297
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 63 LPVGAAXPPQCPSLVAIACRRCKGTNLQTWKAGSHSLTNWCNAEGFT 203
+P G PP P ++ R+ Q W+ S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +1
Query: 232 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 357
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/50 (22%), Positives = 19/50 (38%)
Frame = +3
Query: 48 SWSGSLPVGAAXPPQCPSLVAIACRRCKGTNLQTWKAGSHSLTNWCNAEG 197
S S + +G P +A R ++Q G H ++W +G
Sbjct: 89 SMSSQIAIGGMRNPMATRKIAGTYRDAPDNSMQQTSTGVHRSSSWLTTDG 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,735
Number of Sequences: 5004
Number of extensions: 34974
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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