Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I11
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 195 2e-50
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 177 7e-45
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 175 2e-44
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 140 9e-34
04_03_0670 - 18544745-18545119,18545319-18545551,18546377-185464... 36 0.023
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 29 2.6
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 2.6
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 195 bits (476), Expect = 2e-50
Identities = 91/137 (66%), Positives = 109/137 (79%)
Frame = +1
Query: 40 LHAPGQGLSQSALPXRRSVPPWLQLPADAVKAQIYKLGKQGLTPSQIGVMLRDSHGVAQV 219
+H+ G+G+S SA+P +R+ P W++ A V+ I K K+G PSQIGV+LRD HG+ V
Sbjct: 4 MHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLV 63
Query: 220 XFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 399
VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIH
Sbjct: 64 KSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIH 123
Query: 400 RLARYYKTKSVLPPNWK 450
RLARYYK LPP WK
Sbjct: 124 RLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 177 bits (430), Expect = 7e-45
Identities = 81/137 (59%), Positives = 105/137 (76%)
Frame = +1
Query: 40 LHAPGQGLSQSALPXRRSVPPWLQLPADAVKAQIYKLGKQGLTPSQIGVMLRDSHGVAQV 219
+H+ G+G+S S LP RR+ P W++ A V+ I ++ K+G PSQIG +LRD+H V
Sbjct: 4 MHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLA 63
Query: 220 XFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 399
VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+H
Sbjct: 64 QGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVH 123
Query: 400 RLARYYKTKSVLPPNWK 450
RL RYY+ +P +K
Sbjct: 124 RLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 175 bits (427), Expect = 2e-44
Identities = 92/149 (61%), Positives = 105/149 (70%), Gaps = 17/149 (11%)
Frame = +1
Query: 55 QGLSQSALPXRRSVPPWLQLPADAVKA-----------------QIYKLGKQGLTPSQIG 183
+G+S SALP +R+ P WL+ A V A I K K+G PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 184 VMLRDSHGVAQVXFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 363
V+LRD HG+ V VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 364 KFRLILVESRIHRLARYYKTKSVLPPNWK 450
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 140 bits (338), Expect = 9e-34
Identities = 69/105 (65%), Positives = 77/105 (73%)
Frame = +1
Query: 127 VKAQIYKLGKQGLTPSQIGVMLRDSHGVAQVXFVTGKKILRIMKAMGLAPDLPEDLYYLI 306
V+ I K K G SQIGV+LR HG+ V + KIL I+KA GLAP + EDLY+LI
Sbjct: 90 VEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFLI 149
Query: 307 KKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 441
KKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 150 KKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>04_03_0670 -
18544745-18545119,18545319-18545551,18546377-18546476,
18546842-18546910,18547822-18547900,18547989-18548224
Length = 363
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 12 RQKPQTLGRLARSWSGSLPVGAAXPPQCPSLVAIACRRCKGTNLQTWKAGSHSLTNWCNA 191
R+ P + RLA + + V A P++ A+A +L TW S+ W A
Sbjct: 23 RRAPPSAARLASNGIAFVTVAAVAAASPPAIAALAAEPANALSLPTWAVHVSSVAEWVTA 82
Query: 192 EGFTW 206
W
Sbjct: 83 MALVW 87
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 40 LHAPGQGLSQSALPXRRSVPPWLQLPADAVKAQIYKLGKQGLTPSQI 180
L PGQG P +V P Q+P A A+ YK+G L +Q+
Sbjct: 1297 LEGPGQGKQAPRPPAPTAVRPG-QVPRGAPAAECYKMGLAHLEQNQL 1342
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +1
Query: 238 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 396
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 397 HRLARY 414
HR Y
Sbjct: 164 HRGGEY 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,712
Number of Sequences: 37544
Number of extensions: 259689
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -