Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I11
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   220   6e-58
Z70718-7|CAA94671.1|  289|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF002702-1|AAC27976.1|  289|Caenorhabditis elegans PAX protein p...    30   1.3  
U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box...    28   5.4  
U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical pr...    28   5.4  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   9.4  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   9.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  220 bits (537), Expect = 6e-58
 Identities = 100/148 (67%), Positives = 126/148 (85%)
 Frame = +1

Query: 40  LHAPGQGLSQSALPXRRSVPPWLQLPADAVKAQIYKLGKQGLTPSQIGVMLRDSHGVAQV 219
           +H PG+G+++SA+P RRSVP W ++ A+ V+ QI K+ K+GL PSQIGV+LRDSHGV QV
Sbjct: 4   MHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQV 63

Query: 220 XFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 399
             + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIH
Sbjct: 64  RRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIH 123

Query: 400 RLARYYKTKSVLPPNWKYESSTASALVA 483
           RLARYYKTK  LPP WKYES TA++LV+
Sbjct: 124 RLARYYKTKRQLPPTWKYESGTAASLVS 151


>Z70718-7|CAA94671.1|  289|Caenorhabditis elegans Hypothetical
           protein C04G2.7 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 ADAVKAQIYKLGKQGLTPSQIGVMLRDSHG 207
           AD V+AQI ++ + G  P  I   L+ SHG
Sbjct: 47  ADTVRAQIVEMSQHGTRPCDISRQLKVSHG 76


>AF002702-1|AAC27976.1|  289|Caenorhabditis elegans PAX protein
           protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 ADAVKAQIYKLGKQGLTPSQIGVMLRDSHG 207
           AD V+AQI ++ + G  P  I   L+ SHG
Sbjct: 47  ADTVRAQIVEMSQHGTRPCDISRQLKVSHG 76


>U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box)
           transcriptionfactor protein 2 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 DAVKAQIYKLGKQGLTPSQIGVMLRDSHG 207
           D ++AQI ++ + G  P  I   L+ SHG
Sbjct: 110 DTIRAQIVEMSQHGTRPCDISRQLKVSHG 138


>U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical
           protein T24C12.4 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 60  SLPVGAAXPPQCPSLV-AIACRRCKGTN 140
           S  +GAA PP C  ++ +IACRR +  N
Sbjct: 75  STALGAAFPPCCSDIISSIACRRLQQHN 102


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 102 LVAIACRRCKGTNLQTWKAGSHSLTNWCNAEGFTWSCP 215
           +V+  C  C  T L   + G+H L+    A G++  CP
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICP 128


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 392 GFTDWPVITKLRVCFLLTG 448
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 392 GFTDWPVITKLRVCFLLTG 448
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,532
Number of Sequences: 27780
Number of extensions: 204938
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)