Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I10
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   3.8  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   3.8  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    26   5.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.6  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 379 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRIL 245
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 344 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 508
           L  DK+++K+F E K   ++  P  N++   D F       +I +L C H  LM+
Sbjct: 76  LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 314 EWCGPC*YASRG*ERLRHRHQ 252
           +WCGPC Y     E+L  ++Q
Sbjct: 45  DWCGPCKYLKPFLEKLSEQNQ 65


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 504 WTKVICTSISPGLKINSRPMPRK*QLSXSML 596
           W K +C S  P + INS   P   +LS S L
Sbjct: 866 WRKDLCVSTPPMVDINSALFPHWFKLSASNL 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,244
Number of Sequences: 5004
Number of extensions: 40131
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)