Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I10
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 135 3e-32
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 82 4e-16
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.87
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 2.7
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 2.7
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 2.7
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 2.7
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 135 bits (326), Expect = 3e-32
Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 9/195 (4%)
Frame = +2
Query: 59 IPTLGAXKIDMXAATSVLQXRASEXRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQKDL 238
+P +DM ATS LQ A E R + NW SY +SQMI + D++FI + + K+
Sbjct: 4 VPHHNIPAVDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEE 63
Query: 239 PDK-----NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFS 394
D+ N + A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F +
Sbjct: 64 RDQVLAANNANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQK 123
Query: 395 GNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLK-TNAEE 571
VW +L +L RQD F+ + + IIAKLAC+ M+ DL +Y S+LK+QLK + +
Sbjct: 124 RTVWSQYLGILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTND 183
Query: 572 MTAELXHAEQVMLEH 616
Q+ML H
Sbjct: 184 YMNTTARCLQMMLRH 198
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 81.8 bits (193), Expect = 4e-16
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Frame = +2
Query: 113 QXRASEXRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 280
Q A + R + NW + +++MI Q D+DFIV Q + + + F++
Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74
Query: 281 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 454
L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H
Sbjct: 75 LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134
Query: 455 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL 553
+T I+ K+A + + +L + + LK+ +
Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAM 167
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 400 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 293
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 467 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 297
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 296 *YASRG*ERLRHRHQDSCQADLF 228
RG HR + C AD F
Sbjct: 491 -QCDRG--WTGHRCEHHCPADTF 510
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 467 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 297
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 296 *YASRG*ERLRHRHQDSCQADLF 228
RG HR + C AD F
Sbjct: 491 -QCDRG--WTGHRCEHHCPADTF 510
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 467 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 297
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 296 *YASRG*ERLRHRHQDSCQADLF 228
RG HR + C AD F
Sbjct: 491 -QCDRG--WTGHRCEHHCPADTF 510
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 467 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 297
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 296 *YASRG*ERLRHRHQDSCQADLF 228
RG HR + C AD F
Sbjct: 491 -QCDRG--WTGHRCEHHCPADTF 510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,354
Number of Sequences: 27780
Number of extensions: 239691
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -