Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I09
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...   105   1e-23
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   3.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   4.5  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.5  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  105 bits (251), Expect = 1e-23
 Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
 Frame = +2

Query: 284 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 463
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 464 QATMAAAERFKAPET------TATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXIV 625
           QA      + +A ET      T    DA    T                         +V
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIE-ESFEQEKAVDETGVDAKDIELV 142

Query: 626 MSQANVSRAKAVRALKNNQSDIVNAIMELTM 718
           M+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 143 MAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 71  QQYIKMPELTELDKATASMTEKRKEE 148
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 352 DCHSLYTLYWFETEFTHYLSGLLL 281
           D H LYTL+W  +E   YL+G +L
Sbjct: 347 DRHHLYTLHW-TSEMGGYLAGFIL 369


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 473 MAAAERFKAPETTATGNDASTTGTTVA 553
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 473 MAAAERFKAPETTATGNDASTTGTTVA 553
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,139
Number of Sequences: 5004
Number of extensions: 52672
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)