Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I06
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    36   5e-04
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   3.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   7.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   7.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
 Frame = +1

Query: 367 PGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 546
           PG ++ L C A+G+P P + W      +   + E N+ I    T    + S L +T   +
Sbjct: 427 PGNSVFLKCIASGNPTPEITWELYGRRLS--NSERNQ-IGQYVTVNGDVVSHLNITAIHT 483

Query: 547 QD--VYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRV 720
            D  +Y C             V  +   + + S R  ++ L    V S        G  +
Sbjct: 484 NDGGLYRC-------------VASSKVGSADHSARINVYGLP--FVRSMEKQAIVAGGTL 528

Query: 721 VLPCRVKGHPKPKITW-FNGQNVPIEKNPRMKVLRSGELVISSL 849
           ++ C   GHP   + W  +G+ +PI  N + KV  +G L+I ++
Sbjct: 529 IVHCPFAGHPVDSVVWERDGRQLPI--NRKQKVFINGTLIIENV 570



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 32/133 (24%), Positives = 52/133 (39%)
 Frame = +1

Query: 370 GTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQ 549
           G     TC   G+P  ++ W K+  P+     + NE       ++ RI S     R   +
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI-----DHNE-------AVLRIESV----RKEDK 385

Query: 550 DVYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 729
            +Y C                + ++  EL    +  P  P+I  +++      GN V L 
Sbjct: 386 GMYQCFIRNDQE---------SAEATAELKLGGRFEP--PQIRHAFNEETVQPGNSVFLK 434

Query: 730 CRVKGHPKPKITW 768
           C   G+P P+ITW
Sbjct: 435 CIASGNPTPEITW 447



 Score = 29.5 bits (63), Expect = 0.036
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 3/144 (2%)
 Frame = +1

Query: 379 IELTCEAAGSPAPSVHWFK-NDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD- 552
           + L C A G P+PS  W+K  +    +  V  N+        + +++ TLI+     +D 
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLND-------RVKQVAGTLIIREAKVEDS 302

Query: 553 -VYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 729
             Y C+             V      T L+  A   PLK +I     T   + G      
Sbjct: 303 GKYLCVVNNS---------VGGESVETVLTVTA---PLKAKIEPQVQTI--DFGRPATFT 348

Query: 730 CRVKGHPKPKITWFNGQNVPIEKN 801
           C  +G+P   I+W    + PI+ N
Sbjct: 349 CNFEGNPIKTISWLKDGH-PIDHN 371



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 355 YAHTPGTTIELTCEAAGSPAPSVHWFKND 441
           +++T G  +E  C A G+P P + W ++D
Sbjct: 35  FSNTTGAVVE--CSAHGNPTPDIIWVRSD 61



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 721 VLPCRVKGHPKPKITWFNGQNVPIEKNPRMK-VLRSGELV 837
           V+ C   G+P P I W       +   P ++ VL +G LV
Sbjct: 42  VVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLV 81



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 667  PRIVVSYS-TYVDNIGNRVVLPCRVKGHPKPKITW 768
            P  + S+  T+       V LPC   G P P ITW
Sbjct: 1306 PAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITW 1340



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 616 TDSATELSERAKLF-PLKPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW 768
           ++SA+  +    LF  + PR ++  +      G+   + C+  G P+P +TW
Sbjct: 681 SNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 358 AHTPGTTIELTCEAAGSPAPSVHW 429
           A   G+   + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 688 STYVDNIGNRVVLPCRVKGHPKPKI 762
           S Y++NI +R VLP    G+ +P I
Sbjct: 18  SGYLENIRDRRVLPTVEPGYLRPLI 42


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 374 VPGVCAYDGRGPCVIDKYL 318
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 374 VPGVCAYDGRGPCVIDKYL 318
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 493 PTSIARISSTLI 528
           PTS+ +ISSTL+
Sbjct: 75  PTSVTKISSTLL 86


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 280 IENGVQAKSDGSH--KYLSITQGPLPSYAHTPGTTIELTCEAA 402
           I+ G +A  +G +  KYL + +     Y H P T  E    AA
Sbjct: 429 IKFGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAA 471


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 244 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPS 354
           K I+  S IDN   NG   +    H+   +   P P+
Sbjct: 218 KRIEEKSQIDNLFHNGFMQEQSTHHQGQLVVGLPAPT 254


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 622 YLYCRPQCWLAQSWSSW 572
           Y+ C     LAQ W++W
Sbjct: 273 YIACSTPFILAQLWATW 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,511
Number of Sequences: 336
Number of extensions: 3766
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)