Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_I05
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...   130   1e-30
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    45   6e-05
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713...    28   9.0  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score =  130 bits (314), Expect = 1e-30
 Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 2/190 (1%)
 Frame = +2

Query: 176 GRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQN 355
           GRAVV+ C    P +KN +SLGG H G   +P CG+     C     L+    Y+ +VQ 
Sbjct: 128 GRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCILADSLIKMEIYSDYVQA 184

Query: 356 SLVQATYWHDPLDERTYEANSVFLADINNVRTV--NKTYIQNLNNLERFVLVMFDNDSIV 529
            L  + Y   P D   Y     FL  +NN      N TY +  ++LE  VL+MF +D+++
Sbjct: 185 HLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERFSSLENLVLIMFQDDAVL 244

Query: 530 QPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGKLIFLSTPGDHLRFTEEW 709
            P+ET WFG+Y  G  + ++  +++K+Y++D +GLK +D  G++ F+S PG HL  ++  
Sbjct: 245 IPRETAWFGYYPDGGFDPVLPPQKTKLYMEDWIGLKTLDDEGRVKFVSVPGGHLGISKTD 304

Query: 710 MIKNIIKPYL 739
           M+K I+ PYL
Sbjct: 305 MMKYIV-PYL 313


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +2

Query: 176 GRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQN 355
           GRAV++ C    P +KN +S+GG H G   +P CG+     C  +  L+    Y+++VQ 
Sbjct: 131 GRAVIEYCDGG-PPVKNFISIGGPHAGTASVPLCGS--GIVCVLIDALIKLEIYSNYVQA 187

Query: 356 SLVQATYWHDP 388
            L  + Y   P
Sbjct: 188 HLAPSGYLKIP 198



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 12/27 (44%), Positives = 22/27 (81%)
 Frame = +2

Query: 602 SKIYLQDRLGLKKMDKAGKLIFLSTPG 682
           +K+Y +D +GLK +++AG++ F+S PG
Sbjct: 200 TKLYTEDWIGLKALEEAGRVKFVSVPG 226


>03_04_0143 +
           17670103-17670430,17670511-17670785,17670897-17671376,
           17671454-17671849,17673215-17673289,17673939-17673960,
           17674041-17674129,17675204-17675495,17676019-17676087,
           17676394-17676572
          Length = 734

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +2

Query: 284 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKT 463
           L+H   D++       AY S+   S+ +A   HD LD+R   A     + + +  T    
Sbjct: 469 LKHNRGDELGVFTPSHAYKSYQDISISRAPEQHDELDKRLLWAELSKTSRLLDDNTTGTN 528

Query: 464 YIQNLNNLERFVLVMFDNDSIVQPKETEW 550
            +  +++     L   D D +   KE  W
Sbjct: 529 ELNVVSSQHGEQLNAKDQDELQNIKEKVW 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,078,736
Number of Sequences: 37544
Number of extensions: 385929
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)