Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_I04
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical pr... 198 4e-51
AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finge... 198 4e-51
U80449-2|AAB37826.1| 112|Caenorhabditis elegans Hypothetical pr... 105 4e-23
Z46242-13|CAA86328.1| 135|Caenorhabditis elegans Hypothetical p... 57 1e-08
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 44 1e-04
AC024806-4|AAF59525.1| 192|Caenorhabditis elegans Hypothetical ... 39 0.004
Z11115-11|CAA77447.1| 161|Caenorhabditis elegans Hypothetical p... 38 0.007
AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical ... 38 0.007
AL031620-4|CAA20925.1| 456|Caenorhabditis elegans Hypothetical ... 37 0.013
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 36 0.023
U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical pr... 36 0.023
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 36 0.023
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 36 0.040
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 35 0.052
AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical ... 35 0.069
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 33 0.21
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 32 0.37
AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical ... 32 0.37
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 32 0.37
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 32 0.49
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 31 1.1
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 30 1.5
AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical ... 30 1.5
Z35595-4|CAA84635.1| 170|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 30 2.0
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 30 2.0
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 29 2.6
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 29 3.4
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 29 4.5
Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical pr... 28 6.0
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 28 6.0
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical
protein ZK287.5 protein.
Length = 110
Score = 198 bits (482), Expect = 4e-51
Identities = 81/90 (90%), Positives = 84/90 (93%)
Frame = +3
Query: 159 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA 338
KKRFEVKKW+AV LWAWDI VDNCAICRNHIMDLCIECQANQA+ +ECTVAWG CNHA
Sbjct: 21 KKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHA 80
Query: 339 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 428
FHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 81 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 110
>AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finger
protein Rbx1 protein.
Length = 101
Score = 198 bits (482), Expect = 4e-51
Identities = 81/90 (90%), Positives = 84/90 (93%)
Frame = +3
Query: 159 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA 338
KKRFEVKKW+AV LWAWDI VDNCAICRNHIMDLCIECQANQA+ +ECTVAWG CNHA
Sbjct: 12 KKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHA 71
Query: 339 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 428
FHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 72 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 101
>U80449-2|AAB37826.1| 112|Caenorhabditis elegans Hypothetical
protein R10A10.2 protein.
Length = 112
Score = 105 bits (251), Expect = 4e-23
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +3
Query: 156 DKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 335
+ + F +KKWNA+ +WAWD+ D CAICR H+M+ C+ CQ S S EC V WG CNH
Sbjct: 26 ESRPFVLKKWNALAVWAWDVECDTCAICRVHLMEECLRCQ----SEPSAECYVVWGDCNH 81
Query: 336 AFHFHCISRWLKTRQVCPLDNREW 407
+FH C+++W++ CPL ++W
Sbjct: 82 SFHHCCMTQWIRQNNRCPLCQKDW 105
>Z46242-13|CAA86328.1| 135|Caenorhabditis elegans Hypothetical
protein F35G12.9 protein.
Length = 135
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +3
Query: 174 VKKWNAVXLWAW-DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFH 350
VKK + W W D C ICR C N ++C + G+C HAFH H
Sbjct: 53 VKKLHVCGEWKWLQGGEDTCGICRMEFESAC-----NMCKFPGDDCPLVLGICRHAFHRH 107
Query: 351 CISRWL-----KTRQVCPLDNREW 407
CI +W+ + R CPL ++W
Sbjct: 108 CIDKWIAAPTNQPRAQCPLCRQDW 131
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 309 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 401
TV C +H+HCISRWLK VCP +R
Sbjct: 2120 TVTCDTCTREYHYHCISRWLKINSVCPQCSR 2150
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 309 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 401
TV C +H+HCISRWLK VCP +R
Sbjct: 2120 TVTCDTCTREYHYHCISRWLKINSVCPQCSR 2150
>AC024806-4|AAF59525.1| 192|Caenorhabditis elegans Hypothetical
protein Y52E8A.2 protein.
Length = 192
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 297 SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 401
S E T+ C FH C S+W K + VCP NR
Sbjct: 147 STEKTIKCNSCRRRFHLDCASQWFKEKSVCPACNR 181
>Z11115-11|CAA77447.1| 161|Caenorhabditis elegans Hypothetical
protein ZK637.14 protein.
Length = 161
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 156 DKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 335
D++ + +K +A D + +N I +H++ + + T+ TV C H
Sbjct: 59 DRETTDQQKEDATCAICLDNLQNNVDIPEDHVIK-----EELKIDPTTFGTTVIVMPCKH 113
Query: 336 AFHFHCISRWLKTRQVCP 389
FH+ C++ WL+ +Q CP
Sbjct: 114 RFHYFCLTLWLEAQQTCP 131
>AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical
protein Y54E10BR.3 protein.
Length = 304
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPL 392
CNH FH CI WLKT+ CP+
Sbjct: 256 CNHIFHRPCIEPWLKTKNSCPV 277
>AL031620-4|CAA20925.1| 456|Caenorhabditis elegans Hypothetical
protein C18B12.4 protein.
Length = 456
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 327 CNHAFHFHCISRWL-KTRQVCPLDNRE 404
C H FH +CI WL +TR++CPL R+
Sbjct: 265 CRHVFHCNCIDVWLTQTRKICPLCKRK 291
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.023
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C+H FH HC+ W + +Q CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical
protein B0432.13 protein.
Length = 451
Score = 36.3 bits (80), Expect = 0.023
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 324 VCNHAFHFHCISRWLKTRQVCP 389
VC H +H CIS+W+ T++ CP
Sbjct: 30 VCGHIYHHGCISQWIATKRQCP 51
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 264 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQVCPLDNREWEFQKY 422
++C ++ S+EC + CNH+F F CIS W+ R CP+ ++ + Y
Sbjct: 66 LQCTICLSTRFSQECRIEG--CNHSFCFSCISEWVCQSLRPSCPMCRKDVDKVSY 118
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 35.5 bits (78), Expect = 0.040
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 267 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 398
EC + TV C +H C+ +W K +++CP N
Sbjct: 899 ECLVCLEDMVKNQDTVKCSTCKRQYHTTCVQKWFKIKRICPTCN 942
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 35.1 bits (77), Expect = 0.052
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPLDNRE 404
CNH FH CI +WL + CP+ E
Sbjct: 451 CNHVFHPECIYKWLDINKRCPMCREE 476
>AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical
protein Y119C1B.5 protein.
Length = 754
Score = 34.7 bits (76), Expect = 0.069
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPL 392
C H FH C+ +WL + VCPL
Sbjct: 620 CKHYFHGPCLRKWLAVKMVCPL 641
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 267 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 389
EC + E TV C +H HC ++WL + CP
Sbjct: 527 ECIICREDIDLENGTVQCPRCTEIYHSHCATQWLSQKPTCP 567
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 324 VCNHAFHFHCISRWLKTR---QVCPL 392
+C H F + C+S+WL TR QVCP+
Sbjct: 40 LCGHLFCWPCLSQWLDTRPNNQVCPV 65
>AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.11 protein.
Length = 487
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 422
C H FH C+ WL +++ CPL + ++ Y
Sbjct: 335 CGHEFHPKCVDPWLLSKRRCPLCQFDVVYKHY 366
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 267 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 398
EC E T+ C +H C +W K +++CP N
Sbjct: 890 ECLVCLEDMMEEHETLKCSNCKRQYHTGCAQKWFKVKRICPTCN 933
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 31.9 bits (69), Expect = 0.49
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPL 392
C H F + C+ WLK++ CP+
Sbjct: 54 CGHTFCYSCLFDWLKSQDTCPM 75
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 324 VCNHAFHFHCISRWLKTRQVCPL 392
+CNH H + I+ W +T + CP+
Sbjct: 5021 ICNHGGHVNHIATWFETEKYCPV 5043
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 255 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 377
D+C+ C + A C + G C H FHFHC+ L+ R
Sbjct: 3515 DVCVICFTERLGAAP--C-IRLG-CGHMFHFHCVRMILERR 3551
>AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical
protein H10E21.5 protein.
Length = 473
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPL 392
C H +H CI WL + CP+
Sbjct: 245 CKHIYHKSCIDPWLLEHRTCPM 266
>Z35595-4|CAA84635.1| 170|Caenorhabditis elegans Hypothetical
protein C01G6.4 protein.
Length = 170
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C H+FH C+ WL CP
Sbjct: 113 CMHSFHQECVDEWLMKSFTCP 133
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +3
Query: 267 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 389
EC E T+ C +H C +W K +++CP
Sbjct: 518 ECLVCLEDMKEEHETLKCLDCKRKYHTGCAQKWFKVKRICP 558
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 29.9 bits (64), Expect = 2.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C FH C ++WL ++ CP
Sbjct: 1044 CRRRFHLECATKWLNEKRECP 1064
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 29.9 bits (64), Expect = 2.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C FH C ++WL ++ CP
Sbjct: 1078 CRRRFHLECATKWLNEKRECP 1098
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C FH C ++WL ++ CP
Sbjct: 753 CRRRFHLKCATKWLNEKRECP 773
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCPLDNRE 404
C H F CI WL + CP+ E
Sbjct: 352 CTHVFCKFCIETWLDQKSTCPICRAE 377
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 324 VCNHAFHFHCISRWL-KTRQVC 386
+CNH+FH C+ +W T VC
Sbjct: 275 LCNHSFHARCLEQWADNTCPVC 296
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 327 CNHAFHFHCISRWLKTRQVCP 389
C FH C ++WL ++ CP
Sbjct: 460 CRRRFHSKCATKWLNEKRECP 480
>Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical
protein B0272.3 protein.
Length = 309
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 393 LVDKLVESSTNGKYSGNGMHDYK 325
L++ LV+S NG+ SG G + YK
Sbjct: 287 LLNSLVDSGKNGRKSGEGFYKYK 309
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 312 VAWGVCNHAFHFHCISRWLKTRQVCPL 392
V + C H+ C RWL + VCP+
Sbjct: 37 VTFLTCKHSICAGCAGRWLSSCSVCPM 63
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 261 CIECQANQASATSEECTVAWG--VCNHAFHF 347
C +C+ N S S+ CTV +G + N F++
Sbjct: 23 CTDCKINTISDVSKNCTVVYGDIIVNSTFNY 53
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = -1
Query: 494 LIPYVQKMSNSCAGCSSSK*HLMTILLELPFSIV*WTNLSSLQPTGNTVEMECMITNTPS 315
LI V K S++ A CSS HL+++ + + + L+++ T + ++C ++ P+
Sbjct: 36 LITDVAKHSDATANCSSYGGHLISVQNAIDNNA--YLQLAAVSVTPYWLGIKCSLSGNPA 93
Query: 314 NC 309
+C
Sbjct: 94 SC 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,121
Number of Sequences: 27780
Number of extensions: 372176
Number of successful extensions: 777
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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