Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H24
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    33   0.25 
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           31   0.78 
02_01_0410 + 2996779-2997888                                           31   0.78 
06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925     29   4.1  
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    29   4.1  
03_01_0065 + 529200-529438,529770-529929,530217-530299,530398-53...    29   4.1  
08_02_1469 + 27345430-27345534,27345690-27345763,27345852-273459...    28   7.2  

>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 375 LVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG--SNSKGNEEL 548
           L+ S ++ +  LD SLS  +  +++  Y +         I++  T+KPG  SN++  + L
Sbjct: 470 LLGSNIAPLRDLDFSLSPLLAAQSMTKYNSAAPTTTGPAISMQETLKPGVFSNAQSTQNL 529

Query: 549 NTTKIVT 569
            +T I T
Sbjct: 530 PSTSIAT 536


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
 Frame = +3

Query: 216 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 395
           LL   +V GVAAG  L   L +  ++W+   VM F +PG L      + +V +L+   + 
Sbjct: 50  LLQQASVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 106

Query: 396 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 509
            I    L+L    K    A+++Y++    + +L  A V T
Sbjct: 107 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 146


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
 Frame = +3

Query: 216 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 395
           LL   +V GVAAG  L   L +  ++W+   VM F +PG L      + +V +L+   + 
Sbjct: 33  LLQQTSVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 89

Query: 396 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 509
            I    L+L    K    A+++Y++    + +L  A V T
Sbjct: 90  LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 129


>06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925
          Length = 327

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 262 WDVACGHPDISGPNETSCTSNFPGSFSSGCSRV 360
           W+V  G  D    + T+  +N PG  SSG S V
Sbjct: 149 WNVQLGRKDSRTASGTAANANLPGPASSGASLV 181


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 285 GHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGL 440
           GH    R   +F     L      S  +PLLV  + + IG +  S SG++G+
Sbjct: 272 GHMDGSRSHPHFPVTARLTSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGI 323


>03_01_0065 +
           529200-529438,529770-529929,530217-530299,530398-530488,
           530585-530680,531107-531220,531325-531408,531493-531648,
           531755-531829,532172-532278,532361-532544,532970-533158,
           533372-533452,533794-533925,534302-534355,534484-534809,
           534925-535030,535491-535640,535763-535909
          Length = 857

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 219 LTILTVVGVAAGTLLGCGLRASGHQWSKRDVMY--FQFPGELFLRMLKSLIVPLLVSSIV 392
           L + + + V + T    G  AS    + R V+   FQFP EL L+   + +    V SIV
Sbjct: 624 LDLASSLEVGSATAQASG-DASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIV 682

Query: 393 SAIGSLDLSLS-GKVGLRA 446
           SA+  + +++S  + GL A
Sbjct: 683 SAVQRVSMAISPSQTGLNA 701


>08_02_1469 +
           27345430-27345534,27345690-27345763,27345852-27345996,
           27346359-27346460
          Length = 141

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 38  VSRSKYKIESNDNSDAVLNALNRVVCDKVVLFLILKRKKVAE 163
           +S  + KI+   N D   NA + +VC  V   L LK++K AE
Sbjct: 59  ISMIRNKIDQYTNDDDAGNARSYLVCMFVCSVLGLKKRKCAE 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,110
Number of Sequences: 37544
Number of extensions: 410620
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)