Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H24
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    90   2e-20
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.82 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 49/147 (33%), Positives = 79/147 (53%)
 Frame = +3

Query: 201 FIRENLLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLV 380
           + R+N+L + T+  V  G +LG   R +    + + +    FPGEL +R+LK  I+PL+V
Sbjct: 59  WFRKNMLLVFTIAAVLVGLILGFLGRLANP--TPQSITLISFPGELLMRLLKMFILPLIV 116

Query: 381 SSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPGSNSKGNEELNTTK 560
           SS++S +  LD   SG++G RA++YY  TT+ A ++GI +V  I PG + +    +   K
Sbjct: 117 SSLISGMAQLDPKGSGRMGYRALLYYTVTTILAAIVGIVMVLIIHPG-DPRIKSVVTAYK 175

Query: 561 IVTKXXXXXXXXXXXXRNVFPXNIPQA 641
                           RN+ P N+ QA
Sbjct: 176 ADYTKISTLDAILDIIRNMVPENLVQA 202


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 225  ILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQ 323
            +  ++ +    ++ C LR  GH   K DV+Y Q
Sbjct: 1592 VAAILVIIVAVIVICVLRGKGHGSDKDDVVYQQ 1624


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 391 TIEETSKGTIKLLSILRKSSPGNWKYMTSRLDH*CPDARRPHPSNVPAATPTTVRMVSRF 212
           ++E  SK T   L  +  +     +Y  SR+D+   +   P PS+   A P  V   + F
Sbjct: 91  SVEPDSKVTYSGLWRVCVAISSRMEYECSRIDYFPNEEYSPDPSDSTMAIPYAVTKSAMF 150


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 231 TVVGVAAGTLL-GCGLRASGHQWSKRDVM-YFQFPGELFLRMLKSLIVPLLVSSIVSAIG 404
           T + VA  TL  G   +A     ++  +M  F+ P  +FL+ + +   P+++ +     G
Sbjct: 660 TEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENG 719

Query: 405 SLDLSLSGKVG 437
           SLD  L    G
Sbjct: 720 SLDTFLRANDG 730


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 322 NFPGSFSSGC 351
           N PGSF++GC
Sbjct: 69  NSPGSFTAGC 78


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 322 NFPGSFSSGC 351
           N PGSF++GC
Sbjct: 69  NSPGSFTAGC 78


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 568 PKTPSLPIHYWI 603
           P T ++PIH WI
Sbjct: 532 PLTDTVPIHTWI 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,115
Number of Sequences: 438
Number of extensions: 3932
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)