Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H23
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.34 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   2.4  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   4.2  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   9.6  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 195  VLVYRTEKYQKLKVEVERQSKKLEKRKE 278
            +L    EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +3

Query: 426 FNSIFDGRVV----AKLPFYPISWIQGLSHRNLP 515
           FN IF   +V     +LP+Y   WI    +R LP
Sbjct: 8   FNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLP 41


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  LSTVSTLCRFILKTFEIINLNSF*V-YLSLD*RFCKMWSD 134
           +ST++ L +    + E +NL    + Y+ L  RFCK WSD
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSD 311


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 LVYRTEKYQKLKVEVERQSKKLEKRKE 278
           L ++ EKY  L  E+E   K  EK +E
Sbjct: 230 LYHKQEKYSLLMQEIENAKKLYEKDRE 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,628
Number of Sequences: 5004
Number of extensions: 29021
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)