Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H22
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.6  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 355 KTSLMTASFCVWTILF-ISSILTLVSASILAATPSLV 248
           KT L T  +C + ILF +S  + LV  + L  TP+ V
Sbjct: 313 KTVLKTNKYCNFIILFYLSVFVILVYYASLDETPNPV 349


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 213 FHAPVCTFQLHLEPPP 166
           FHA   +  LH  PPP
Sbjct: 151 FHAAATSLPLHYPPPP 166


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 373 MSYTRFKTSLMTAS-FCVWTILFISSILTLVSASILAATPSLV 248
           +S T+   +L+TA  +C   I  +  +L   + SIL   PSL+
Sbjct: 400 LSKTKTFCTLVTALVYCSLAIFVLCELLIEGTTSILINVPSLI 442


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 39  FLCVFDMASQTQGIQQLLAAEKR 107
           F+CV  + S+ +G+Q +   +KR
Sbjct: 345 FVCVNTLVSEQEGLQLINEMKKR 367


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 KNLKPSTWVPGKVLRPRSM 279
           KNL  S ++  K  RPRS+
Sbjct: 177 KNLYYSFYISDKAARPRSL 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,571
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)