Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_H21
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X54993-1|CAA38736.1| 335|Homo sapiens TFIID protein. 79 2e-14
M55654-1|AAA36731.1| 339|Homo sapiens TATA-box binding protein ... 79 2e-14
CR456776-1|CAG33057.1| 339|Homo sapiens TBP protein. 79 2e-14
BT019657-1|AAV38463.1| 336|Homo sapiens TATA box binding protei... 79 2e-14
BC110341-1|AAI10342.1| 338|Homo sapiens TATA box binding protei... 79 2e-14
BC109053-1|AAI09054.1| 338|Homo sapiens TATA box binding protei... 79 2e-14
AL031259-5|CAA20286.1| 339|Homo sapiens TATA box binding protei... 79 2e-14
M34960-1|AAC03409.1| 339|Homo sapiens transcription factor IID ... 79 2e-14
BC109054-1|AAI09055.1| 288|Homo sapiens TBP protein protein. 77 6e-14
DQ448593-1|ABD93323.1| 375|Homo sapiens TATA box binding protei... 75 2e-13
BC117185-1|AAI17186.1| 375|Homo sapiens TATA box binding protei... 75 2e-13
BC117159-1|AAI17160.1| 375|Homo sapiens TATA box binding protei... 75 2e-13
AY457923-1|AAR24281.1| 375|Homo sapiens TBP-related factor 3 pr... 75 2e-13
AL031259-6|CAD92543.1| 208|Homo sapiens TATA box binding protei... 70 7e-12
L07518-1|AAB61945.1| 505|Homo sapiens mucin protein. 33 0.79
AL365360-3|CAI95313.1| 1317|Homo sapiens KIAA2026 protein. 31 4.2
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 31 4.2
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 31 4.2
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 31 4.2
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot... 31 5.6
X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro... 31 5.6
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot... 31 5.6
M61951-1|AAA59486.1| 1786|Homo sapiens laminin B1 protein. 31 5.6
M61916-1|AAA59482.1| 1786|Homo sapiens laminin B1 protein. 31 5.6
M55370-1|AAA59485.1| 1786|Homo sapiens laminin B1 protein. 31 5.6
BC142619-1|AAI42620.1| 772|Homo sapiens LAMB4 protein protein. 31 5.6
BC113455-1|AAI13456.1| 1786|Homo sapiens laminin, beta 1 protein. 31 5.6
AF172277-3|AAF22284.1| 761|Homo sapiens laminin beta 1 related ... 31 5.6
AF028816-1|AAC95123.1| 1761|Homo sapiens laminin beta-4 chain pr... 31 5.6
U97519-1|AAB61574.1| 528|Homo sapiens podocalyxin-like protein ... 30 7.3
BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like, precu... 30 7.3
BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein. 30 7.3
BC064348-1|AAH64348.1| 944|Homo sapiens chromosome 13 open read... 30 7.3
BC053566-1|AAH53566.1| 781|Homo sapiens C13orf23 protein protein. 30 7.3
AL445590-3|CAI40975.1| 944|Homo sapiens chromosome 13 open read... 30 7.3
AK055816-1|BAB71022.1| 518|Homo sapiens protein ( Homo sapiens ... 30 7.3
AB107354-1|BAC67659.1| 952|Homo sapiens KIAA2032 protein protein. 30 7.3
DQ442656-1|ABD97848.1| 260|Homo sapiens transcription factor PA... 30 9.7
BC107150-1|AAI07151.1| 341|Homo sapiens PAX4 protein protein. 30 9.7
BC107149-1|AAI07150.1| 257|Homo sapiens PAX4 protein protein. 30 9.7
BC074761-1|AAH74761.1| 343|Homo sapiens paired box 4 protein. 30 9.7
AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precur... 30 9.7
AF043978-1|AAD02289.1| 343|Homo sapiens paired-box transcriptio... 30 9.7
AB008913-1|BAA24506.1| 350|Homo sapiens Pax-4 protein. 30 9.7
>X54993-1|CAA38736.1| 335|Homo sapiens TFIID protein.
Length = 335
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 70 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 127
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 128 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 187
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 188 YNPKRFAAVIMRIREPRTTALIF 210
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 250 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 301
>M55654-1|AAA36731.1| 339|Homo sapiens TATA-box binding protein
protein.
Length = 339
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 74 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 131
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 132 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 191
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 192 YNPKRFAAVIMRIREPRTTALIF 214
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 305
>CR456776-1|CAG33057.1| 339|Homo sapiens TBP protein.
Length = 339
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 74 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 131
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 132 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 191
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 192 YNPKRFAAVIMRIREPRTTALIF 214
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 305
>BT019657-1|AAV38463.1| 336|Homo sapiens TATA box binding protein
protein.
Length = 336
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 71 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 128
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 129 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 188
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 189 YNPKRFAAVIMRIREPRTTALIF 211
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 251 KIQNMVGSCDVKFPIRLEGPVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 302
>BC110341-1|AAI10342.1| 338|Homo sapiens TATA box binding protein
protein.
Length = 338
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 73 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 130
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 131 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 190
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 191 YNPKRFAAVIMRIREPRTTALIF 213
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 253 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 304
>BC109053-1|AAI09054.1| 338|Homo sapiens TATA box binding protein
protein.
Length = 338
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 73 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 130
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 131 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 190
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 191 YNPKRFAAVIMRIREPRTTALIF 213
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 253 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 304
>AL031259-5|CAA20286.1| 339|Homo sapiens TATA box binding protein
protein.
Length = 339
Score = 79.0 bits (186), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 74 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 131
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 132 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 191
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 192 YNPKRFAAVIMRIREPRTTALIF 214
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 305
>M34960-1|AAC03409.1| 339|Homo sapiens transcription factor IID
protein.
Length = 339
Score = 78.6 bits (185), Expect = 2e-14
Identities = 45/143 (31%), Positives = 70/143 (48%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 74 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 131
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 132 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRRRNAE 191
Query: 478 YNPARFQGVVMKILDPRATALVF 546
YNP RF V+M+I +PR TAL+F
Sbjct: 192 YNPKRFAAVIMRIREPRTTALIF 214
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 305
>BC109054-1|AAI09055.1| 288|Homo sapiens TBP protein protein.
Length = 288
Score = 77.0 bits (181), Expect = 6e-14
Identities = 43/104 (41%), Positives = 58/104 (55%)
Frame = +1
Query: 235 GVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVA 414
G SG + Q+ + T TP +P MT +TP AS + +LQN V+
Sbjct: 62 GTSGQ--APQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVS 119
Query: 415 TVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
TV+LGC+L L I R R +EYNP RF V+M+I +PR TAL+F
Sbjct: 120 TVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIF 163
Score = 32.3 bits (70), Expect = 1.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 203 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIF 254
>DQ448593-1|ABD93323.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 75.4 bits (177), Expect = 2e-13
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Frame = +1
Query: 124 EVSQANRVEKAHEGSISEMYSTPKTP-IKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTN 300
EV+Q N+ + +E S ++P + + S++D G+ G N SS + N L P +
Sbjct: 105 EVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGL-GLN-SSSLSNSHSQLHPGD 162
Query: 301 S-SFTPQPLNPHN------SMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYC 459
+ S P P P++ S+T +TPM S +LQN V+TV+L C+L L I
Sbjct: 163 TDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIAL 222
Query: 460 RTRYSEYNPARFQGVVMKILDPRATALVF 546
+ +EYNP RF V+M+I +PR TAL+F
Sbjct: 223 HAKNAEYNPKRFAAVIMRIREPRTTALIF 251
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIF 342
>BC117185-1|AAI17186.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 75.4 bits (177), Expect = 2e-13
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Frame = +1
Query: 124 EVSQANRVEKAHEGSISEMYSTPKTP-IKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTN 300
EV+Q N+ + +E S ++P + + S++D G+ G N SS + N L P +
Sbjct: 105 EVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGL-GLN-SSSLSNSHSQLHPGD 162
Query: 301 S-SFTPQPLNPHN------SMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYC 459
+ S P P P++ S+T +TPM S +LQN V+TV+L C+L L I
Sbjct: 163 TDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIAL 222
Query: 460 RTRYSEYNPARFQGVVMKILDPRATALVF 546
+ +EYNP RF V+M+I +PR TAL+F
Sbjct: 223 HAKNAEYNPKRFAAVIMRIREPRTTALIF 251
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIF 342
>BC117159-1|AAI17160.1| 375|Homo sapiens TATA box binding protein
like 2 protein.
Length = 375
Score = 75.4 bits (177), Expect = 2e-13
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Frame = +1
Query: 124 EVSQANRVEKAHEGSISEMYSTPKTP-IKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTN 300
EV+Q N+ + +E S ++P + + S++D G+ G N SS + N L P +
Sbjct: 105 EVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGL-GLN-SSSLSNSHSQLHPGD 162
Query: 301 S-SFTPQPLNPHN------SMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYC 459
+ S P P P++ S+T +TPM S +LQN V+TV+L C+L L I
Sbjct: 163 TDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIAL 222
Query: 460 RTRYSEYNPARFQGVVMKILDPRATALVF 546
+ +EYNP RF V+M+I +PR TAL+F
Sbjct: 223 HAKNAEYNPKRFAAVIMRIREPRTTALIF 251
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIF 342
>AY457923-1|AAR24281.1| 375|Homo sapiens TBP-related factor 3
protein.
Length = 375
Score = 75.4 bits (177), Expect = 2e-13
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Frame = +1
Query: 124 EVSQANRVEKAHEGSISEMYSTPKTP-IKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTN 300
EV+Q N+ + +E S ++P + + S++D G+ G N SS + N L P +
Sbjct: 105 EVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGL-GLN-SSSLSNSHSQLHPGD 162
Query: 301 S-SFTPQPLNPHN------SMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYC 459
+ S P P P++ S+T +TPM S +LQN V+TV+L C+L L I
Sbjct: 163 TDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIAL 222
Query: 460 RTRYSEYNPARFQGVVMKILDPRATALVF 546
+ +EYNP RF V+M+I +PR TAL+F
Sbjct: 223 HAKNAEYNPKRFAAVIMRIREPRTTALIF 251
Score = 31.9 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 KLQNCVATVSLGCELKLLD-IYCRTRYSEYNPARFQGVVMKILDPRATALVF 546
K+QN V + + ++L + ++S Y P F G++ +++ PR L+F
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIF 342
>AL031259-6|CAD92543.1| 208|Homo sapiens TATA box binding protein
protein.
Length = 208
Score = 70.1 bits (164), Expect = 7e-12
Identities = 41/137 (29%), Positives = 65/137 (47%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
Q + Q + ++ + + + ++ + G SG + Q+ + T
Sbjct: 74 QQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQ--APQLFHSQTLTTAP 131
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
TP +P MT +TP AS + +LQN V+TV+LGC+L L I R R +E
Sbjct: 132 LPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAE 191
Query: 478 YNPARFQGVVMKILDPR 528
YNP RF V+M+I +PR
Sbjct: 192 YNPKRFAAVIMRIREPR 208
>L07518-1|AAB61945.1| 505|Homo sapiens mucin protein.
Length = 505
Score = 33.5 bits (73), Expect = 0.79
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Frame = +1
Query: 139 NRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVAL-----TPTNS 303
+R+ +AH + ST + E S TN++ + + D + T S
Sbjct: 226 SRISQAHSSISTAKTSTSLHSHASSTHHPEVTPTSTTNVTPKSTSRDTSTPVTHTTSATS 285
Query: 304 SFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVS 423
S P P+ H+S T +P+ S +SIK T S
Sbjct: 286 SRPPTPITTHSSPTRSSPLSSTGPMTATSIKTTTTYPTPS 325
>AL365360-3|CAI95313.1| 1317|Homo sapiens KIAA2026 protein.
Length = 1317
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 235 GVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCV- 411
G T L + N + SS PQPL+P S++ L PS T + K +N V
Sbjct: 372 GTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLL-TPSVKTSQSEAGKAKNAVS 430
Query: 412 -ATVSL 426
AT SL
Sbjct: 431 AATFSL 436
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 31.1 bits (67), Expect = 4.2
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 166 SISEMYSTPKTPIKA--QNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNS 339
S S ++ST + A F+ + GV+ T S ++ D+ T + TP L+ S
Sbjct: 21 SSSTIHSTVSSSTTAITSPFTTAETGVTSTPSSPSSLSTDIPTTSLRT-LTPLSLSTSTS 79
Query: 340 MTALTPMPSASTQAKS 387
+T T +PS T S
Sbjct: 80 LTTTTDLPSIPTDISS 95
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.1 bits (67), Expect = 4.2
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 178 MYSTPKTPIKA--QNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTAL 351
+YST + A F+ + GV+ T S ++ D+ T + TP L+ S+T
Sbjct: 2 IYSTVSSSTTAITSPFTTAETGVTSTPSSPSSLSTDIPTTSLRT-LTPLSLSTSTSLTTT 60
Query: 352 TPMPSASTQAKS 387
T +PS T S
Sbjct: 61 TDLPSIPTDISS 72
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.1 bits (67), Expect = 4.2
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 178 MYSTPKTPIKA--QNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTAL 351
+YST + A F+ + GV+ T S ++ D+ T + TP L+ S+T
Sbjct: 2 IYSTVSSSTTAITSPFTTAETGVTSTPSSPSSLSTDIPTTSLRT-LTPLSLSTSTSLTTT 60
Query: 352 TPMPSASTQAKS 387
T +PS T S
Sbjct: 61 TDLPSIPTDISS 72
>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
D+ C +RYSE P+ V+ ++LDP
Sbjct: 199 DVVCESRYSEIEPSTEGEVIYRVLDP 224
>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
protein.
Length = 1798
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
D+ C +RYSE P+ V+ ++LDP
Sbjct: 199 DVVCESRYSEIEPSTEGEVIYRVLDP 224
>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
D+ C +RYSE P+ V+ ++LDP
Sbjct: 199 DVVCESRYSEIEPSTEGEVIYRVLDP 224
>M61951-1|AAA59486.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 418 VSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDP 525
+S G K+ DI C +RYS+ P+ V+ + LDP
Sbjct: 177 ISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDP 212
>M61916-1|AAA59482.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 418 VSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDP 525
+S G K+ DI C +RYS+ P+ V+ + LDP
Sbjct: 177 ISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDP 212
>M55370-1|AAA59485.1| 1786|Homo sapiens laminin B1 protein.
Length = 1786
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 418 VSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDP 525
+S G K+ DI C +RYS+ P+ V+ + LDP
Sbjct: 177 ISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDP 212
>BC142619-1|AAI42620.1| 772|Homo sapiens LAMB4 protein protein.
Length = 772
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
DI C ++YS+ P+ VV+K+LDP
Sbjct: 180 DIVCDSKYSDIEPSTGGEVVLKVLDP 205
>BC113455-1|AAI13456.1| 1786|Homo sapiens laminin, beta 1 protein.
Length = 1786
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 418 VSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDP 525
+S G K+ DI C +RYS+ P+ V+ + LDP
Sbjct: 177 ISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDP 212
>AF172277-3|AAF22284.1| 761|Homo sapiens laminin beta 1 related
protein protein.
Length = 761
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
DI C ++YS+ P+ VV+K+LDP
Sbjct: 168 DIVCDSKYSDIEPSTGGEVVLKVLDP 193
>AF028816-1|AAC95123.1| 1761|Homo sapiens laminin beta-4 chain
precursor protein.
Length = 1761
Score = 30.7 bits (66), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 448 DIYCRTRYSEYNPARFQGVVMKILDP 525
DI C ++YS+ P+ VV+K+LDP
Sbjct: 180 DIVCDSKYSDIEPSTGGEVVLKVLDP 205
>U97519-1|AAB61574.1| 528|Homo sapiens podocalyxin-like protein
protein.
Length = 528
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG--CELKLLDIYCRTRYSEYN 483
TP P H S A TQ++ + L T+ G + KL+ + CR + +N
Sbjct: 300 TPSPTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFN 359
Query: 484 PARFQGVVMKILDPRATALVFRFVLMH 564
PA+ + + P + +V + + +H
Sbjct: 360 PAQDKCGIRLASVPGSQTVVVKEITIH 386
>BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like,
precursor isoform 2 protein.
Length = 526
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG--CELKLLDIYCRTRYSEYN 483
TP P H S A TQ++ + L T+ G + KL+ + CR + +N
Sbjct: 298 TPSPTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFN 357
Query: 484 PARFQGVVMKILDPRATALVFRFVLMH 564
PA+ + + P + +V + + +H
Sbjct: 358 PAQDKCGIRLASVPGSQTVVVKEITIH 384
>BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein.
Length = 526
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG--CELKLLDIYCRTRYSEYN 483
TP P H S A TQ++ + L T+ G + KL+ + CR + +N
Sbjct: 298 TPSPTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFN 357
Query: 484 PARFQGVVMKILDPRATALVFRFVLMH 564
PA+ + + P + +V + + +H
Sbjct: 358 PAQDKCGIRLASVPGSQTVVVKEITIH 384
>BC064348-1|AAH64348.1| 944|Homo sapiens chromosome 13 open reading
frame 23 protein.
Length = 944
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 217 FSKEDAGVSGTNLS--SQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 390
++ G +LS S+ + TP + F+P NP S A TP+P+AS +
Sbjct: 236 YTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNP--STPAATPVPTASPVKAIN 293
Query: 391 IKLQNCVATVS 423
+ ATVS
Sbjct: 294 HPSASAAATVS 304
>BC053566-1|AAH53566.1| 781|Homo sapiens C13orf23 protein protein.
Length = 781
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 217 FSKEDAGVSGTNLS--SQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 390
++ G +LS S+ + TP + F+P NP S A TP+P+AS +
Sbjct: 73 YTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNP--STPAATPVPTASPVKAIN 130
Query: 391 IKLQNCVATVS 423
+ ATVS
Sbjct: 131 HPSASAAATVS 141
>AL445590-3|CAI40975.1| 944|Homo sapiens chromosome 13 open reading
frame 23 protein.
Length = 944
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 217 FSKEDAGVSGTNLS--SQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 390
++ G +LS S+ + TP + F+P NP S A TP+P+AS +
Sbjct: 236 YTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNP--STPAATPVPTASPVKAIN 293
Query: 391 IKLQNCVATVS 423
+ ATVS
Sbjct: 294 HPSASAAATVS 304
>AK055816-1|BAB71022.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ31254 fis, clone KIDNE2005526, highly similar to
Homo sapiens podocalyxin-like protein mRNA. ).
Length = 518
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG--CELKLLDIYCRTRYSEYN 483
TP P H S A TQ++ + L T+ G + KL+ + CR + +N
Sbjct: 290 TPSPTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFN 349
Query: 484 PARFQGVVMKILDPRATALVFRFVLMH 564
PA+ + + P + +V + + +H
Sbjct: 350 PAQDKCGIRLASVPGSQTVVVKEITIH 376
>AB107354-1|BAC67659.1| 952|Homo sapiens KIAA2032 protein protein.
Length = 952
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 217 FSKEDAGVSGTNLS--SQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSS 390
++ G +LS S+ + TP + F+P NP S A TP+P+AS +
Sbjct: 244 YTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNP--STPAATPVPTASPVKAIN 301
Query: 391 IKLQNCVATVS 423
+ ATVS
Sbjct: 302 HPSASAAATVS 312
>DQ442656-1|ABD97848.1| 260|Homo sapiens transcription factor PAX4
protein.
Length = 260
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 122 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 169
>BC107150-1|AAI07151.1| 341|Homo sapiens PAX4 protein protein.
Length = 341
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 122 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 169
>BC107149-1|AAI07150.1| 257|Homo sapiens PAX4 protein protein.
Length = 257
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 122 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 169
>BC074761-1|AAH74761.1| 343|Homo sapiens paired box 4 protein.
Length = 343
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 124 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 171
>AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precursor
variant protein.
Length = 526
Score = 29.9 bits (64), Expect = 9.7
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 TPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLG--CELKLLDIYCRTRYSEYN 483
TP P H S A TQ++ + L T+ G + KL+ + CR + +N
Sbjct: 298 TPSPTVAHESNWAKCEDLETQTQSEKQLILNLTGNTLCAGGASDEKLISLICRAVKATFN 357
Query: 484 PARFQGVVMKILDPRATALVFRFVLMH 564
PA+ + + P + +V + + +H
Sbjct: 358 PAQDKCGIRLASVPGSQTVVVKEITIH 384
>AF043978-1|AAD02289.1| 343|Homo sapiens paired-box transcription
factor protein.
Length = 343
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 124 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 171
>AB008913-1|BAA24506.1| 350|Homo sapiens Pax-4 protein.
Length = 350
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 223 KEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNP---HNSMTALTP 357
+ED G+ T L S V LTP + S TP+ +P H + T +P
Sbjct: 132 QEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSP 179
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,410,250
Number of Sequences: 237096
Number of extensions: 1628856
Number of successful extensions: 3907
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3902
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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