Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_H21
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 60 2e-09
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 60 2e-09
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 60 2e-09
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 32 0.48
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 32 0.48
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 32 0.48
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 32 0.48
AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical ... 31 0.63
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 30 1.9
Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.6
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 29 3.4
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 29 3.4
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 29 4.5
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +1
Query: 334 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 513
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 514 ILDPRATALVF 546
I +PR TAL+F
Sbjct: 207 IREPRTTALIF 217
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 376 QAK-SSIKLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 546
QAK + +QN V + + ++L + +++S Y P F G++ +++ PR L+F
Sbjct: 250 QAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIF 308
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +1
Query: 334 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 513
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 514 ILDPRATALVF 546
I +PR TAL+F
Sbjct: 207 IREPRTTALIF 217
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 376 QAK-SSIKLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 546
QAK + +QN V + + ++L + +++S Y P F G++ +++ PR L+F
Sbjct: 250 QAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIF 308
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +1
Query: 334 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 513
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 514 ILDPRATALVF 546
I +PR TAL+F
Sbjct: 207 IREPRTTALIF 217
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 376 QAK-SSIKLQNCVATVSLGCELKLLDI-YCRTRYSEYNPARFQGVVMKILDPRATALVF 546
QAK + +QN V + + ++L + +++S Y P F G++ +++ PR L+F
Sbjct: 250 QAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIF 308
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +1
Query: 172 SEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTAL 351
S + S+ P +QN + + SG+++ +Q + +P SS TP P +P ++T+
Sbjct: 840 SSVASSSPAPSTSQNPNPSTS--SGSSMITQSPYPSQSTSPVESSTTPSPGSPGTTLTST 897
Query: 352 TPMPSASTQAKSS 390
+P PS ST S+
Sbjct: 898 SPSPSQSTTIGST 910
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 181 YSTPKTPIKAQNFSKEDAGVSGTNLS-SQVVNGDVALTPTNSSF--TPQPLNPHNSMTAL 351
+ + +TP + + + VSG+N S S V G + + SSF +P ++P + + +
Sbjct: 1297 HGSTQTPSTIGSTVTQPSTVSGSNSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPI 1356
Query: 352 TPMPSASTQAKSSIKLQNCVATVSL 426
AS+ + S+I + V+T SL
Sbjct: 1357 PSTTFASSTSGSTISDVSSVSTTSL 1381
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 223 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 279
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 280 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 337
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 338 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 390
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 205 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 261
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 262 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 319
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 320 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 372
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 223 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 279
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 280 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 337
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 338 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 390
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 205 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 261
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 262 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 319
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 320 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 372
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 91 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 147
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 148 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 205
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 206 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 258
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 31.9 bits (69), Expect = 0.48
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Frame = +1
Query: 115 NQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALT 291
++ + + N + +EGS S Y T TPI + S S N + Q + G V
Sbjct: 101 SERDKHKKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV--- 157
Query: 292 PTNSSFTPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--D 450
+ SF+ + NS+ + SA+ + I L+ + C+ + D
Sbjct: 158 --SRSFSENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFD 215
Query: 451 IYCRTRYSEYNPARFQGVVMKILDPRATALVFRFVL--MHVC---SFIVCLYY 594
CR + R GVV K PR AL L +H+ SF++C+ Y
Sbjct: 216 QLCRVDVTIEAAFRQPGVVAKRTPPRWLALERLTTLEDVHIAWCRSFVLCIDY 268
>AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical
protein Y51F10.10 protein.
Length = 337
Score = 31.5 bits (68), Expect = 0.63
Identities = 27/120 (22%), Positives = 53/120 (44%)
Frame = +1
Query: 118 QMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPT 297
+ E + +K +E + + ST T + +++G T+ S Q V+G +
Sbjct: 48 EAETRAREQFDKQNEPIVLDSTSTKTTTTASPPGGNKNSGEVRTSESRQSVSGYDDVLSQ 107
Query: 298 NSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 477
N P P+N + SMT+ + PS S + L +T ++ ++++L + R E
Sbjct: 108 NV-LVPCPVNSNPSMTSSSTKPSVSNTSAMVHSLHEFESTNNVFDDIQILALDDRKALQE 166
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 268 VNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATV 420
+NG PTN + T PLN + T P+ A+T S+ + + TV
Sbjct: 231 LNGTTTTVPTNETTTTSPLN--GTTTTTVPINGATTTIPSNGNITSTTTTV 279
>Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical
protein F29F11.4 protein.
Length = 713
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +2
Query: 47 VCLVXHALISVVIXALKCASKH*IKWKSLKQIGLKKHMKVLSVKCIQHQKHQSKLKILVK 226
+C + +AL + + ++ I+WK KQ+G + L + + + QS K L K
Sbjct: 142 ICTIFYALFGIPCFLMYLKIENAIEWKKDKQLG----KRALKMHGLINDSFQSIGKTLSK 197
Query: 227 KMQEFQEQ 250
KM+++ ++
Sbjct: 198 KMKKYYKK 205
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 301 SSFTPQPLNPHNSMTALTPMPSASTQAKSS 390
S TP L+P +S+TA TP P ++TQA S+
Sbjct: 461 SKSTPSFLSPTDSLTATTP-PGSTTQAAST 489
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 TNSSFT-PQPLNPHNSMTALTPMPSASTQAKSS 390
T++SF+ P PL H S + + M SAS Q KSS
Sbjct: 497 TSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSS 529
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 TNSSFT-PQPLNPHNSMTALTPMPSASTQAKSS 390
T++SF+ P PL H S + + M SAS Q KSS
Sbjct: 513 TSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSS 545
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 112 LNQMEVSQANRVEKAHEGSISEMYSTPKTPIKAQNFSKE 228
L++ + ++ VE GS+ +TP TP K +F KE
Sbjct: 847 LDKFDDNEFLLVEGTRRGSVEHAPTTPTTPTKPMSFGKE 885
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 27.9 bits (59), Expect = 7.8
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Frame = +1
Query: 181 YSTPKTPIK-----AQNFSKEDAGVSGTNLSSQVVNGDVALT-------PTNSSFTPQPL 324
Y+ P++ +K A+ +EDA ++GT L ++V+G +T T + L
Sbjct: 526 YAEPQSTLKIFAKLAKLRQREDALMTGTTLIGRLVDGAFTITRFNNFENRTTGNIYVAAL 585
Query: 325 N--PHNSMTALTPMPSASTQAKSSI--KLQNCVA 414
N H LT +PS S KS+I NCVA
Sbjct: 586 NFAEHPVKLPLTDLPSNSKLHKSTIVTATSNCVA 619
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,567
Number of Sequences: 27780
Number of extensions: 261891
Number of successful extensions: 788
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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