Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H20
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    89   6e-19
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   0.84 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   3.4  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   4.5  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    26   5.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.8  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   7.8  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 48/118 (40%), Positives = 67/118 (56%)
 Frame = +3

Query: 240 VDLAYKIHGKPLSKNSVPILVIHGLMGSKKNFESXXXXXXXXXXXXXXXVDLRNHGDSPH 419
           V LA++ +   ++K+  P+L+ HGL+GSK+N+ S               +D R HGDSP 
Sbjct: 6   VKLAFEKYSATVAKHP-PVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPC 64

Query: 420 TSSHTYLELAADISHLMKKVSVKRAKIVGHSMGGRTAMVLALTENPKVASLVVVDISP 593
            +  +Y  +A D    MK   + +A I+GHSMG +TAMV AL    KV  LVVVD SP
Sbjct: 65  VAPLSYSAMALDAFQFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSP 122


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 483 VKRAKIVGHSMGGRTAMVLALTENPKVASLVVVDISPVS 599
           +++  +VGHSMGG  + V A+    +V  L++V  SPV+
Sbjct: 171 IEKMILVGHSMGGYLSAVYAMQYPERVEKLLLV--SPVA 207


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 290 SYTGDTRVNGLQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHELTYVPRIGR*YIPSN 469
           S +GD       + L       ++  + + +HC  + SRR SS+ L Y+  +   Y  SN
Sbjct: 466 SSSGDFSALSCHRNLSFSESLPTAEDQVHNNHCAVSPSRRSSSNAL-YLATLPMGYERSN 524

Query: 470 EESF 481
             S+
Sbjct: 525 SVSY 528


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 316 INPCITSIGTLFLERGFPCILYAKSTVERLQ--KNIKDITFLFKS 188
           + PCI+ +G        PC    K   +RL+  KNI+ IT   K+
Sbjct: 12  MRPCISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKT 56


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 393 LRNHGDSPHTSSHTYLELA 449
           L +HGD+P ++ +T +ELA
Sbjct: 347 LHHHGDAPFSAGYTLVELA 365


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 320 LQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHELTYVPRIGR*YIPSN--EESFRKKS 493
           L+  + + +Q+  S HE++R H    K ++   +E      +    I SN  +E   K+ 
Sbjct: 760 LEDMIHDEQQETKSGHEQFREHAMKEKEKKGKENENMGETTVDHENINSNVMDEQGEKQK 819

Query: 494 ED 499
           +D
Sbjct: 820 DD 821


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 281 EQCSYTGDTRVNGLQKELREYRQKHSSHHEEYRHHCRFTKSRRQSSHE 424
           ++  YT D  V+   +   E  Q+H  HHE   +H    K   +  HE
Sbjct: 517 QKMGYTNDDHVSQ-HEHTHENSQEH--HHEHNHNHDHIHKYNEKCDHE 561


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 498 SSLFLRKLSSLDGIYQRPILGTYVSSCEDCRRDFVNL 388
           + L +R++S +  + ++ +LG  + +C D +R+ V L
Sbjct: 305 NDLPVREVSGIGRVLEQQLLGLEIKTCGDIQRNLVIL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,024
Number of Sequences: 5004
Number of extensions: 62437
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)