Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H19
         (452 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y2K1 Cluster: Zinc finger and BTB domain-containing p...    33   2.9  
UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome sh...    33   3.8  

>UniRef50_Q9Y2K1 Cluster: Zinc finger and BTB domain-containing
           protein 1; n=24; Tetrapoda|Rep: Zinc finger and BTB
           domain-containing protein 1 - Homo sapiens (Human)
          Length = 713

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 131 GRRMQTHAKRNGTXSDLAQNGTGLVPERHHTNTSPQKHDD 12
           GR++Q HA+R G   DL  NG G   E+     +P +  +
Sbjct: 460 GRQLQEHAQRCGEPQDLTMNGLGNTEEKMDLEENPDEQSE 499


>UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF15018, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 754

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +1

Query: 28  GDVFVWCRSGTKP--VPFCARSDXVPLRFAWVCIRRPPSWSPLG 153
           G+V  W RSG +P       R   VP   AW   RRP  W   G
Sbjct: 39  GEVLFWIRSGPRPRLTLLGDRRGYVPRPLAWSTSRRPGEWGGAG 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,783,514
Number of Sequences: 1657284
Number of extensions: 6533485
Number of successful extensions: 17698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17691
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)