Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_H19
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0119 + 11485753-11486202 28 3.1
02_01_0341 + 2444419-2445495 28 4.0
05_04_0099 - 17991569-17993014 27 5.3
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 27 5.3
02_03_0050 + 14433013-14433303 27 7.1
02_01_0345 + 2484073-2485152 27 7.1
07_03_1031 - 23389263-23389541 27 9.3
05_01_0196 + 1415664-1416842 27 9.3
03_03_0006 - 13666961-13667755 27 9.3
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 9.3
01_05_0746 + 24856362-24856710,24856799-24856986 27 9.3
>04_03_0119 + 11485753-11486202
Length = 149
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 28 GDVFVWCRSGTKPVPFCARSDXVPLRFAWVCIRRPPSWSPL 150
G ++ WC S P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>02_01_0341 + 2444419-2445495
Length = 358
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 43 WCRSGTKPVPFCARSDXVPLRFAW 114
W ++G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>05_04_0099 - 17991569-17993014
Length = 481
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 38 LCGVAPELNQCHFVPGRXQSHCVSRGSASVGRHLG 142
LCGVAPE C G CV S G LG
Sbjct: 150 LCGVAPETAGCARGGGSGDDACVVAASYGAGVALG 184
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 68 CHFVPGRX--QSHCVSRGSASVGRHLGRRWGVVAASYKM 178
C ++P R +S SRG A+ HL RR + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144
>02_03_0050 + 14433013-14433303
Length = 96
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 142 SPLGRGCCQLQNGFVERYHVPIYLVLSNCKF 234
S LGR Q Q G V R H P+Y+ S C++
Sbjct: 19 SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47
>02_01_0345 + 2484073-2485152
Length = 359
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 43 WCRSGTKPVPFCARSDXVPLRFAWV 117
W + G +PFC R++ VP W+
Sbjct: 214 WSKVGDWALPFCGRAEFVPEHGLWL 238
>07_03_1031 - 23389263-23389541
Length = 92
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 191 RSTNPFCSWQQPRPSGDQDGG 129
R+ P+CSWQ S D GG
Sbjct: 3 RTCLPWCSWQLAAASADNSGG 23
>05_01_0196 + 1415664-1416842
Length = 392
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 19 CFCGDVFVWCRSGTKPVPFCARSDXVPLRFAWVCIRRPPSWSP 147
CF W +G +PFC + + VP W + +++P
Sbjct: 229 CFDTVSCSWSHAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAP 271
>03_03_0006 - 13666961-13667755
Length = 264
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 146 GDQDGGR-RMQTHAKRNGTXSDLAQNGTGLVPERHHTNTSPQKHD 15
G + GGR R + H +R D G G + HH + +HD
Sbjct: 158 GGRGGGRGRRRGHGRRGRLRGDDDDEGGGGDDDDHHDDDDDHEHD 202
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 104 VSRGSASVGRHLGRRWGVVAAS 169
VS G AS+GRHL RR V S
Sbjct: 9 VSAGEASLGRHLARRLVQVGVS 30
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 79 ARSDXVPLRFAWVCIRRPPSW 141
ARSD P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,034
Number of Sequences: 37544
Number of extensions: 187966
Number of successful extensions: 637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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