Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H18
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    29   0.81 
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.81 
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   4.3  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   4.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   5.7  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   5.7  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 386  IDSTLKFVKFIERNFIIVKKKEVGKENKCVQIMTLLTIIDRR*QKFL*ILS---LYNFIE 216
            ID  +KF++F  +    VK + +  EN+  +  T L+ +     K+L ++S   L+N  E
Sbjct: 1025 IDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENKYLKLMSNLKLHNLTE 1084


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 119 SVNNFIPSIINLNKISRNTFFLYLPYLKNCSL 214
           ++ N  PS+ N+  +S    FL+ P L +C++
Sbjct: 105 AIKNLDPSLYNITLVSPRDHFLFTPMLPSCTV 136


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 5   VKLMRK*IHTIFYKAVNRRIYFENEILTLYYRKNHICNSVNNFIPSIIN-LNKISRNTFF 181
           VK  +K +  I   A    +YFEN+ L L   KN   N  +N IP   N   K+S  +  
Sbjct: 95  VKSSQKPVKNITVNAEAPEVYFENDTLYLANLKNQ--NIGDNVIPYPNNKAVKVSAKSLR 152

Query: 182 LYLPYLKNCSLI 217
                + NCS +
Sbjct: 153 SCNISISNCSSV 164


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 152 LNKISRNTFFLYLPYLKNCSLIL*SYINLKFIKTFVTFYLL*LVRSLFERTYSLYLPLFF 331
           L+K  R+ FF++L    N S+IL + +N K  +    FY   ++RSL +R  SLY  L  
Sbjct: 468 LSKFVRH-FFMFL----NDSVILATEVNEKAPR----FYRRFILRSLVDRLKSLYPKLAL 518

Query: 332 SQ 337
           SQ
Sbjct: 519 SQ 520


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 365 VKFIERNFIIVKKKEVGKENKCVQ 294
           +K++E NF+ VKK  + + N+ VQ
Sbjct: 720 LKYVESNFLSVKKDTIEEANEPVQ 743


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 505 IYNIETTHIYSVNQSYDMIKVYYITFSYQKLVEISN 612
           I N+E +++ S  + Y+ I +Y++T S   L  + N
Sbjct: 76  IVNVEFSNVQSYFRYYNYISLYFVTHSKVPLNRLPN 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,886
Number of Sequences: 5004
Number of extensions: 43724
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)