Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H15
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    31   1.0  
AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 379 YNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNL 522
           YNF+Y + NC   + ++L  N+FL   R Y  I C   F +++ KL L
Sbjct: 52  YNFLYFSPNCVETIFVSLGRNLFLCLQRRY--IHC---FFHFLLKLTL 94


>AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.15 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 11  IRMIIFFKSIRKTHPIFKIINNSLIDLPSPSNXSS*XNIGSLL--ALCLIIQIITGLFLT 184
           +++ I +  I     +  +++NS++ L      S   ++  LL  A+C ++  I+ L  T
Sbjct: 48  VKLQIIYGIILPVLAVLVVVSNSVVILVLSQQKSKRASVEPLLWMAICSLLMAISPLPFT 107

Query: 185 I-YYTANIEIAFYRVNYIC 238
           I YY  +  + F +  ++C
Sbjct: 108 IYYYNLSHHLDFNQTLFLC 126


>AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical
           protein Y75B12B.4 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -2

Query: 76  VVNDFKNW---VCFSN*FKKDYH 17
           VVN+FKNW   +C+ N F  D H
Sbjct: 107 VVNNFKNWEEAICYDNRFVLDKH 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,956
Number of Sequences: 27780
Number of extensions: 236092
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)