Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H14
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738...    40   0.002
05_06_0056 + 25246631-25246913,25247047-25247141,25247593-252476...    39   0.005
02_01_0079 + 554635-556098                                             30   1.6  
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202...    28   6.5  
05_01_0253 + 1934043-1934201,1934456-1934536,1935008-1935199,193...    28   8.6  

>01_06_0799 -
           32072656-32072841,32072846-32072950,32073726-32073839,
           32073935-32073996,32074709-32074745,32075091-32075179,
           32075331-32075604
          Length = 288

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 612 EFTDVLVHPDWSYQTGWRFKKRPGVDQFLQ 701
           +  + LV+ DW  + GWR  KRPGVD FL+
Sbjct: 181 DLNETLVYSDWKRERGWRTFKRPGVDAFLE 210


>05_06_0056 +
           25246631-25246913,25247047-25247141,25247593-25247629,
           25248158-25248219,25248305-25248418,25249248-25249352,
           25249441-25249539,25250203-25250359,25250473-25250579
          Length = 352

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 612 EFTDVLVHPDWSYQTGWRFKKRPGVDQFLQ 701
           +  + LV+ DW  + GWR  KRPGVD F++
Sbjct: 186 DLNETLVYSDWLRERGWRTFKRPGVDAFIE 215


>02_01_0079 + 554635-556098
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 354 LGFAVFGGGLTVAATCLVIEMGSPRRDDEGQIIEDE 461
           LGF  FGG  +V    LV+E+G P RDD  + + +E
Sbjct: 289 LGFNAFGG-FSVFLPFLVMEVGKPGRDDLRRRLREE 323


>02_05_0140 -
           26218828-26219759,26219885-26220002,26220089-26220278,
           26220380-26220514,26220617-26220714,26221697-26221866,
           26222586-26222961
          Length = 672

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 476 HCLSIPETFLERTHI--L*KDDKGAIKREITSRPFASTVPAYIHSSLRIHRCPGAS*LVL 649
           HCLS+   F     +  + +D   A  +++   P A  VP  + +S  I  C G+  L  
Sbjct: 562 HCLSLSVGFFAFAVLTNVARDALPARYKKLVPLPTAMAVPFLVGASFAIDMCVGSLVLFA 621

Query: 650 PNGLEVQEAARRGPVPPGG 706
            N +  +EAA   P    G
Sbjct: 622 WNKMNKKEAAFMVPAVASG 640


>05_01_0253 +
           1934043-1934201,1934456-1934536,1935008-1935199,
           1935313-1935548,1935638-1936220
          Length = 416

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 381 LTVAATCLVIEMGSPRRDDEG 443
           LTV   C V E+GSPR++  G
Sbjct: 366 LTVIVVCFVSELGSPRQEQVG 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,864
Number of Sequences: 37544
Number of extensions: 298578
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)