Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_H04
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 297 8e-82
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.8
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.3
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 26 6.3
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 25 8.3
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 8.3
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 297 bits (730), Expect = 8e-82
Identities = 131/188 (69%), Positives = 164/188 (87%)
Frame = +2
Query: 161 KSNHTNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPR 340
+S+HTNNWAVL+ TSRFWFNYRH ANVL IYRSVKRLGIPDSQIILMI+DD ACN RN
Sbjct: 20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLF 79
Query: 341 PATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQLLTDEGSNIL 520
P T+F++A +++YG+++E+DY+GYEV+VE FIRLLT RVP +TP SK+LLT+E SNIL
Sbjct: 80 PGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLLTNERSNIL 139
Query: 521 IYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSP 700
IY+TGHGGDGF+KFQD+EE++S++LADA+EQ+ Q KRYNEI F++DTCQA+S+Y K YSP
Sbjct: 140 IYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSP 199
Query: 701 NILXTASS 724
N+L SS
Sbjct: 200 NVLAIGSS 207
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 443 RLLTGRVPPDTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEE 577
RL GR+PP R + +G ++ G GF++ +D+ +
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARD 49
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 622 LPHLFQSISKLLAGH 578
LPH+ +SISKLLA H
Sbjct: 740 LPHMKKSISKLLADH 754
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 663 HVSIMKKISLYLFFCHICSKASASSWLVTSSES 565
H + KK+SL C CSK S+S ++ S S
Sbjct: 1418 HNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNS 1450
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +2
Query: 236 NVLSIYRSVKRLGIPDSQIILMISD---DMACNPRNPRPATIFNSAHEQINVYGDDVEVD 406
N+ + R+ ++ + + + L + D D A +P + + + I V+ ++E+
Sbjct: 1340 NMAKVIRACDQMHLWNEAVFLYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELY 1399
Query: 407 YRGYEVSVENFIRLLTGRVPPDTPR 481
YR +E LLT + TPR
Sbjct: 1400 YRALNFYLEQHPMLLTDLLAALTPR 1424
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +2
Query: 236 NVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPRPATIFNSAHEQINVYGDDVEVDYRG 415
N++ + S+K + + Q++ + + +AC P +I+N AH ++ D +
Sbjct: 222 NLIDRFLSIKVVSLQKVQLVGLSALLIACKYEEIHPPSIYNFAHVVQGIFTVDEIIRAER 281
Query: 416 YEVSVENF 439
Y + + +F
Sbjct: 282 YMLMLLDF 289
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 203 SRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPRPATIFNSAHEQI 376
+RF F Y ++A + RS+K +P+S + I+ + + R+ R +F A QI
Sbjct: 231 TRFVFLYMYLATAFFLLRSLKYAVLPES--TMAINATITSHQRSRRIYFLFFIAASQI 286
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 314 YRQKSLE*SDCQVFLIVSHSDKSIKHSQRDDS 219
+R + + DCQ+ VSHS + I+ + D S
Sbjct: 531 FRSQEVSKVDCQLAAHVSHSIECIRQKENDPS 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,504
Number of Sequences: 5004
Number of extensions: 55675
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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