Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_H04
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 281 5e-76
05_07_0334 - 29358823-29360247 108 5e-24
01_05_0347 + 21226612-21226857,21227623-21227787,21228183-212283... 106 2e-23
06_01_0035 + 358669-359007,359458-359617,359723-360582 103 2e-22
02_05_0109 - 25909126-25909308,25909454-25909660,25910130-259103... 98 7e-21
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789... 97 2e-20
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 31 0.70
02_05_0138 - 26190110-26191038,26191123-26191221,26191388-261915... 31 0.93
01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497... 30 1.6
10_08_0748 - 20277623-20277736,20277956-20279425 28 6.6
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 28 8.7
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 28 8.7
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 281 bits (688), Expect = 5e-76
Identities = 126/214 (58%), Positives = 168/214 (78%)
Frame = +2
Query: 86 LMLVFIFNLLYLSLSSGIEIPEEFQKSNHTNNWAVLVDTSRFWFNYRHVANVLSIYRSVK 265
L+L+ L+ L+ S+ + H NNWAVLV TSRFWFNYRH+AN LS+YR+VK
Sbjct: 16 LVLLLPALLMLLAFSTSSSAAASSPGAMHNNNWAVLVCTSRFWFNYRHMANTLSLYRTVK 75
Query: 266 RLGIPDSQIILMISDDMACNPRNPRPATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIR 445
RLGIPD +IILM++DDMACNPRN PA +FN+ + Q+N+YGD+VEVDYRGYEV+VENF+R
Sbjct: 76 RLGIPDERIILMLADDMACNPRNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLR 135
Query: 446 LLTGRVPPDTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQK 625
+LTGR PRSK+LL+DEGS+IL+Y+TGHGGD FLKFQDSEE+ S +LADA++QM +K
Sbjct: 136 VLTGRHESAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEK 195
Query: 626 KRYNEIFFIIDTCQASSMYEKFYSPNILXTASSL 727
R+ E+ ++DTCQA++++ + SP +L SS+
Sbjct: 196 HRFKELLIMVDTCQAATLFSQLQSPGVLTIGSSM 229
>05_07_0334 - 29358823-29360247
Length = 474
Score = 108 bits (259), Expect = 5e-24
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 6/198 (3%)
Frame = +2
Query: 149 EEFQK---SNHTNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMA 319
EEF + S+ T WAVL+ S ++NYRH A+V Y+ +++ G+ + I++M+ DD+A
Sbjct: 28 EEFLRLPSSDETTRWAVLIAGSNGFYNYRHQADVCHAYQIMRKGGVEEQNIVVMMYDDIA 87
Query: 320 CNPRNPRPATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQLLT 499
NP NPRP IFN +VY V DY G +V+V NF+ +L G T +
Sbjct: 88 HNPDNPRPGLIFNHPSGP-DVYA-GVPKDYTGDDVNVNNFLAVLLGNRSALTGSGSGKVV 145
Query: 500 DEGSN--ILIYLTGHGGDGFLKF-QDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQA 670
G N + +Y HGG G L D E + + +L AL++ Y + ++ C++
Sbjct: 146 ASGPNDHVFVYYADHGGPGVLSMPADGEYLYADDLVKALKKKHAGGGYKSLVVYVEACES 205
Query: 671 SSMYEKFYSPNILXTASS 724
S++E +I A++
Sbjct: 206 GSIFEGLLPSDISVYATT 223
>01_05_0347 +
21226612-21226857,21227623-21227787,21228183-21228339,
21228449-21228534,21228629-21228828,21229659-21229707,
21229786-21229998,21230106-21230312,21230451-21230513,
21230514-21230696
Length = 522
Score = 106 bits (255), Expect = 2e-23
Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Frame = +2
Query: 182 WAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPRPATIFNS 361
WAVL+ S ++NYRH A+V Y+ +KR G+ D II+ + DD+A NP NPRP I N
Sbjct: 66 WAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVIIN- 124
Query: 362 AHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQLLTDEGSN--ILIYLTG 535
H Q V DY G EV+V+N +L G S ++L D G N I I+ +
Sbjct: 125 -HPQGGDVYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVL-DSGPNDHIFIFYSD 182
Query: 536 HGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYE 685
HGG G L + +L D L++ Y + F ++ C++ S++E
Sbjct: 183 HGGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFE 232
>06_01_0035 + 358669-359007,359458-359617,359723-360582
Length = 452
Score = 103 bits (246), Expect = 2e-22
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 5/205 (2%)
Frame = +2
Query: 86 LMLVFIFNLLYLSLSSGIEIPEEFQK---SNHTNNWAVLVDTSRFWFNYRHVANVLSIYR 256
LML+ + + L L +G + +EF + N WA+L+ S+ + NYRH A+V Y+
Sbjct: 8 LMLMLMHLQVGLGLGNG-GLWQEFLRLPTENGGTKWALLIAGSKGYENYRHQADVCHAYQ 66
Query: 257 SVKRLGIPDSQIILMISDDMACNPRNPRPATIFNSAHEQINVYGDDVEVDYRGYEVSVEN 436
+K+ G+ D I++M+ DD+A NP NP I N + NVY V DY G +V+ N
Sbjct: 67 IMKKGGLKDQNIVVMMYDDIAYNPENPHKGVIINKPNGP-NVYA-GVPKDYNGNDVNKNN 124
Query: 437 FIRLLTGRVPPDTPRSKQLLTDEGSN--ILIYLTGHGGDGFLKFQDSEEVTSQELADALE 610
F+ +L G+ T + G N I +Y + HG G++ + + +L+ AL+
Sbjct: 125 FLAVLLGKKSALTGAGSGKVISSGPNDHIFVYYSDHGSPGYVCMPSGGNLHANDLSQALK 184
Query: 611 QMWQKKRYNEIFFIIDTCQASSMYE 685
Y + ++ C++ SM+E
Sbjct: 185 NKNAAGAYKNLVVYVEACESGSMFE 209
>02_05_0109 -
25909126-25909308,25909454-25909660,25910130-25910336,
25910411-25910459,25911005-25911204,25911275-25911360,
25911441-25911597,25911808-25911972,25913254-25913490
Length = 496
Score = 97.9 bits (233), Expect = 7e-21
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 134 GIEIPEEFQKSNHTNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDD 313
G E EE +K WAVLV S + NYRH A+V Y+ +++ G+ + I++ + DD
Sbjct: 47 GSEGTEEEEKDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVFMYDD 106
Query: 314 MACNPRNPRPATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQL 493
+A N NPRP I N + +VY V DY G EV+ +NF +L G T S+++
Sbjct: 107 IANNILNPRPGVIVNHPQGE-DVYA-GVPKDYTGDEVTAKNFYAVLLGNKTAVTGGSRKV 164
Query: 494 LTDE-GSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQA 670
+ + +I I+ + HGG G L + + + + L++ Y ++ ++ C++
Sbjct: 165 IDSKPNDHIFIFYSDHGGPGVLGMPNLPYLYAADFMKVLQEKHASNTYAKMVIYVEACES 224
Query: 671 SSMYE 685
S++E
Sbjct: 225 GSIFE 229
>04_04_0638 -
26877640-26877825,26877954-26878160,26878866-26878925,
26879229-26879435,26879501-26879549,26880138-26880337,
26880425-26880510,26880585-26880741,26880920-26881084,
26881817-26882053
Length = 517
Score = 96.7 bits (230), Expect = 2e-20
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +2
Query: 182 WAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPRPATIFNS 361
WAVLV S + NYRH A+V Y+ +++ G+ + I++ + DD+A N NPRP TI N
Sbjct: 63 WAVLVAGSSGYGNYRHQADVCHAYQILQKGGVKEENIVVFMYDDIAHNILNPRPGTIINH 122
Query: 362 AHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQLLTDE-GSNILIYLTGH 538
+ +VY V DY G++V+ ENF +L G T S +++ + +I IY + H
Sbjct: 123 P-KGGDVYA-GVPKDYTGHQVTTENFFAVLLGNKTAVTGGSGKVIDSKPEDHIFIYYSDH 180
Query: 539 GGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPNI 706
GG G L + + + + L++ Y+++ ++ C++ S++E N+
Sbjct: 181 GGPGVLGMPNLPYLYAGDFIKVLQKKHASNSYSKMVIYVEACESGSIFEGLMPENL 236
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 551 FLKFQDSEEVTSQEL-ADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPNIL 709
+ + D + + S + AD L W K +F I+D +A S EK YS N++
Sbjct: 722 YFNYDDGDNIMSASIHADQLAGQWYAKACG-LFPIVDKDKAESALEKIYSFNVM 774
>02_05_0138 -
26190110-26191038,26191123-26191221,26191388-26191518,
26191622-26191756,26191836-26191933,26192747-26192919,
26193027-26193411
Length = 649
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 542 GDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPNILXTA 718
GDG F +T++ L + + KK +E F+I Q + K Y PN L A
Sbjct: 312 GDGLYHFIKVTGITAKSLHERSNRRHAKKATDEDTFVIADMQRDEFFNKDYIPNWLAYA 370
>01_05_0012 +
17147764-17148141,17148316-17148465,17149360-17149729,
17149898-17150015,17150121-17150226,17150326-17150418,
17150498-17150593,17151169-17151891,17152012-17152160,
17153434-17153520,17153541-17153625
Length = 784
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 377 NVYGDDVEVDYRGYEVSVENFIRLLTGRVP-PDTPRSKQLLTDEGSNILIYLTGHG 541
+++G+++ D + + + + +P P P +KQL +D GS++LI T G
Sbjct: 343 SIFGNEMVADGSNFLSASSDLVDTTVQSIPFPHIPLNKQLSSDHGSSLLINETSGG 398
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +2
Query: 143 IPEEFQKSNHTNNWAVLVDTSRFWFNYRHVA---NVLSIYRSVK---RLGIPDSQIILMI 304
+ E + KS+ T ++V + F Y H A + L I R V RLG+P + +M
Sbjct: 147 VEEFYSKSSRTGLPPIMVSSDTSKFPYTHGAGSRSALRISRIVSETFRLGLPGVRWFVMG 206
Query: 305 SDDMACNPRN 334
DD P N
Sbjct: 207 DDDTVFLPEN 216
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 335 PRPATIFNSAHEQINVY--GDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRS 484
P PA + ++Y D E D ++ V+N+ RLL ++ PDT R+
Sbjct: 403 PWPARLTTPPPRLADLYVTADTFEKDTEMWQQRVDNYWRLLKPKIKPDTIRN 454
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 245 SIYRSVKRLGIPDSQIILMISDDMACNPRN 334
S+Y S++ GIPDS I +MI+ D+ P N
Sbjct: 283 SVYSSLE--GIPDSSIFVMITSDIDKLPSN 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,859
Number of Sequences: 37544
Number of extensions: 339019
Number of successful extensions: 846
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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