Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_H02
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6)              36   0.029
SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                35   0.050
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)                 28   7.6  
SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)               28   7.6  

>SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6)
          Length = 237

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 354 QQGNNWNSRLRKYQYTNHPSVQGPWTPFT---FKDPELNTAELPDVRFGSNNRLPATATE 524
           + G  W++ L  +Q T   ++ GP+ P++   +K P ++    P     S+N  P   T 
Sbjct: 52  RSGTEWDAYLEDFQNTEEMTLPGPYDPYSMEVYKQPIVHLKNFPGFHAASSNPFPHNHTM 111

Query: 525 QLRLMFEKQKLDE 563
            L   F  Q+LD+
Sbjct: 112 FLANAF-GQRLDQ 123


>SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 308

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRTLDSV 436
           +PR     GR++P  TRQ  E  TP V  H  PLG P   DS+
Sbjct: 266 DPRIPYSFGRVLPRPTRQTRESRTPLVVSHLDPLGRPENPDSL 308



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
 Frame = +2

Query: 311 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 463
           +PR     GR+ P  TRQ  E  TP V  H  PLG P         L S H   PRI + 
Sbjct: 213 DPRIPYSFGRVSPRPTRQTRESRTPLVVSHLDPLGSPENPVLLWSCLTSTHSADPRIPYS 272

Query: 464 -GRTTRREIR 490
            GR   R  R
Sbjct: 273 FGRVLPRPTR 282



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
 Frame = +2

Query: 311 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 463
           +PR     GR++P  TRQ  E  TP V  +  PLG P         L S H   PRI + 
Sbjct: 160 DPRIPYSFGRVLPRPTRQTRESRTPLVVSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 219

Query: 464 -GRTTRREIR 490
            GR + R  R
Sbjct: 220 FGRVSPRPTR 229



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = +2

Query: 311 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 463
           +PR     GR++P  TRQ  E  TP V  +  PLG P         L S H   PRI + 
Sbjct: 54  DPRTPYSFGRVLPRPTRQTRESRTPLVLSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 113

Query: 464 -GRTTRREIR 490
            GR   R  R
Sbjct: 114 FGRVLPRPTR 123



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = +2

Query: 311 NPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG-PRT-------LDSVHVQGPRIEH- 463
           +PR     GR++P  TRQ  E  TP V  +  PLG P         L S H   PRI + 
Sbjct: 107 DPRIPYSFGRVLPRPTRQTRESRTPLVVSYLDPLGRPENPVLLWSCLTSTHSADPRIPYS 166

Query: 464 -GRTTRREIR 490
            GR   R  R
Sbjct: 167 FGRVLPRPTR 176


>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 341 FDPFYDLLVGFVVDAHPQSVPVQIFPNYDRPTMS 240
           F P  +L +G +  A P+       P+YD+P ++
Sbjct: 817 FQPSAELTIGSIQKAFPEYASTSTLPSYDKPAVT 850


>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 490 PNLTSGSSAVFNSGSLNVNGVQGPWTEGWFVYWYLRSLEFQLLPC*VRNNSTHFTISSWV 311
           P+LT  S AV  SG  + +        G  VY Y + + ++ L C + NN+T+ T   W 
Sbjct: 130 PSLTIASKAVI-SGCHSASSQPENLLSGAPVYDYAQGVSYRNLDCALCNNATNVTF--WY 186

Query: 310 L 308
           L
Sbjct: 187 L 187


>SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +2

Query: 110 IAENSLQVLQIQRSQPWYERLHRAR------FG*FLKRQPWSGGVFKAT*TSWAGHSWGI 271
           I +NSL+++Q+    PW++  H  R      F   +K +   GGVF    T W  ++  +
Sbjct: 130 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA-TDWEPYAEHM 188

Query: 272 FERGQIVD 295
            E    +D
Sbjct: 189 LEVMSSID 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,215
Number of Sequences: 59808
Number of extensions: 470517
Number of successful extensions: 1503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)