Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G23
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    32   0.10 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.7  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   5.0  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   8.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.8  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 678 DPSPYSLSPISAKSEKLLRSPRKATR 755
           D   YSLSPIS +S+ +LR P+K  R
Sbjct: 82  DRKSYSLSPISPQSQDMLRQPQKPKR 107


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 549 NPSATCPDG-----NKTIGTVQTPGRSSQAYQPVFRFKAPIHRAXENIDPSPYSLSPISA 713
           +PS  C D      +  I  + TP RS+Q    +  F  P+    E++ PSP     I+ 
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLVSGSEDVLPSPRDALNITN 85

Query: 714 K 716
           K
Sbjct: 86  K 86


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +3

Query: 531 QIEEVRNPSATCPDGNKTIGTVQTPGRSSQAYQPVFRFKAPIHRAXENIDPSPYSLSPIS 710
           Q+ ++  PS T  D    IG     G++ +AY  +   + P   + +++     ++ P+S
Sbjct: 364 QVVQITGPSNT-DDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKRATIEPLS 422

Query: 711 AKSEKLLRS 737
            ++   LRS
Sbjct: 423 DQALSTLRS 431


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 24/96 (25%), Positives = 38/96 (39%)
 Frame = +3

Query: 276 RLLQQCSPVARKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQALRRGTENQPAKKARNXXX 455
           ++LQ+ S   R+Q V V  E N G+     R   N     +      +N      +    
Sbjct: 134 KILQEASSKDREQIVQVIKELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWK 193

Query: 456 XXXXXXXXRDQLAYSCLLQNELLGAQIEEVRNPSAT 563
                   +D+L  S     +LL A++EE   PS+T
Sbjct: 194 ELQYFNVSKDKLL-SLEESIKLLSARLEETDTPSST 228


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 471 SLRRCHRHRFAPSLLVDF--PY--LFLVLEKLSANCFQL 367
           +LR+  +H     LL  F  PY  +FLV+E +  N FQL
Sbjct: 75  ALRKISKHPCLIDLLETFMDPYRNIFLVMEFMDCNLFQL 113


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 355 NLSPLLNSAWTSTDCFLATG 296
           N  P+L+  W+ TD +LA G
Sbjct: 304 NKGPVLSLKWSGTDTYLAAG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,620
Number of Sequences: 5004
Number of extensions: 54608
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)