Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G23
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    29   4.0  
06_02_0240 + 13397512-13397856                                         28   7.0  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   9.2  

>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 525 GAQIEEVRNPSATCPDGNKTIGTVQTPGRS 614
           GAQ +  R    +CPDG K I + Q  G S
Sbjct: 702 GAQHDSAREKHQSCPDGTKNIQSKQQNGSS 731


>06_02_0240 + 13397512-13397856
          Length = 114

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 519 VRSVGGSCK--RAGLDRHSLRRCHR---HRFAPSLL 427
           VR + G+ +  R  L+  SLRRCHR   HR  PSLL
Sbjct: 22  VRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLL 57


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +1

Query: 373  ETIGRQLFKH*EEV-RKINQQRRRXXXXXXXXXXXXXXXSSLTAASYRTNSSVHR*RKSG 549
            E++  +  ++ EE+ +K+   RRR               S    +S RT SS  R R   
Sbjct: 860  ESLEEKGLRNTEEIEKKVASHRRRLQSEYGLSFSNDGANSR--RSSERT-SSERRDRHDD 916

Query: 550  IHRRRARMATRLSAPSRRLADHRKLTNRSSDSKR 651
              R+R R  +R  +P RR  +  +  NR+ D+ R
Sbjct: 917  SSRKRHRSLSRSRSPPRRSLERDREHNRNRDTDR 950


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,724
Number of Sequences: 37544
Number of extensions: 400742
Number of successful extensions: 1097
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)