Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_G23
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78412-4|CAB01654.2| 211|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical pr... 31 1.2
U49956-2|AAO38616.1| 136|Caenorhabditis elegans Dauer or aging ... 30 2.0
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 29 4.7
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 6.2
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 28 6.2
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 28 6.2
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 28 6.2
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z78412-4|CAB01654.2| 211|Caenorhabditis elegans Hypothetical
protein M176.5 protein.
Length = 211
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +3
Query: 228 CVRTEDVKMFSKHYETRLLQQCSPVARKQSVL----VQAEFNNGDRFTPCR-AGNNWQTA 392
C+ D F+K++ + L SPV+RK+ +A N+ R T CR A W
Sbjct: 111 CISIHDKFKFAKNFSSEELTSTSPVSRKKRSARRNKREARRNSNSRATECRTAAKLWHKQ 170
Query: 393 FQALRR 410
AL +
Sbjct: 171 CSALAK 176
>Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 613 HRKLTNRSSDSKRQSTEXRKTLILRRTACPRSRL 714
H++L++RS+ + R+T+ +R CP+S L
Sbjct: 275 HKRLSDRSASPRNSFITPRRTITVRSAGCPKSDL 308
>Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 613 HRKLTNRSSDSKRQSTEXRKTLILRRTACPRSRL 714
H++L++RS+ + R+T+ +R CP+S L
Sbjct: 275 HKRLSDRSASPRNSFITPRRTITVRSAGCPKSDL 308
>U49956-2|AAO38616.1| 136|Caenorhabditis elegans Dauer or aging
adult overexpressionprotein 2 protein.
Length = 136
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 498 CKRAGLDRHSLRRCHRHRFAPSLLVDFPY 412
CK+AG+ L+ C H+ APS +D+ +
Sbjct: 83 CKKAGVSGECLKYCTAHKGAPSNYLDYAF 111
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 252 SSRLQFEHTNE-IVRKYKYEGKWKY 181
+ RL F HT E IV+ + Y+GK+K+
Sbjct: 386 NERLDFNHTIEKIVQNHNYDGKYKF 410
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 625 TNRSSDSKRQSTEXRKTLILRRTACPRS 708
TN + D +R S E T L+RT PRS
Sbjct: 622 TNLNYDGRRDSEEESTTTTLKRTTLPRS 649
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 625 TNRSSDSKRQSTEXRKTLILRRTACPRS 708
TN + D +R S E T L+RT PRS
Sbjct: 577 TNLNYDGRRDSEEESTTTTLKRTTLPRS 604
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 625 TNRSSDSKRQSTEXRKTLILRRTACPRS 708
TN + D +R S E T L+RT PRS
Sbjct: 672 TNLNYDGRRDSEEESTTTTLKRTTLPRS 699
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 374 SSSAGCEPVTIVKLSLDQYRLFPCHRTALL 285
SSS CEP +V L LD+ P ++ L
Sbjct: 439 SSSCSCEPTNVVNLMLDEAETIPTSTSSSL 468
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 556 RRRARMATRLSAPSRRLADHRKLTNRSSDSKRQSTEXRKTLILRRTACPRSRLNPKSFSG 735
RRR+ +R AP R + R+ + S+ SK R + PR R +P
Sbjct: 390 RRRSPSKSRSPAPKREIPPARRRRSPSA-SKSPPAPKRAKSRSKSPPAPRRRRSPSQSKS 448
Query: 736 PRGRR 750
P RR
Sbjct: 449 PAPRR 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,211
Number of Sequences: 27780
Number of extensions: 332456
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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