Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_G23
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.19 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 603 PGRSSQAYQPVFRFKAPIHRAXENIDPSPYSLSPISAKSE 722
           PGR  + YQP FR K P  R       S YSL  + +  E
Sbjct: 410 PGRVRRRYQPAFRCK-PSQRFASGRYYSAYSLHHVRSSRE 448


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 485  PARLQLPPTERTPRCTDRGSQESIGDVPG 571
            P + QLPP+   PR T   +      VPG
Sbjct: 1280 PQQQQLPPSSPQPRLTVNHAYRDAVTVPG 1308


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 280 YYSSAVLWQGNSLYWSRLSL 339
           YYS  V+WQ  ++Y S  S+
Sbjct: 136 YYSGLVVWQPPAVYKSSCSI 155


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 306 RKQSVLVQAEFNNGDRFTPCRAGNNWQTAFQALRRGTENQPAKKARN 446
           +K  +L+Q   NN    TPC   N  + +F         QPA    N
Sbjct: 60  QKLRLLLQGNINNQLFQTPCELLNFPKRSFSENMINDHRQPAPTNNN 106


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 491 RLQLPPTERTP 523
           R  LPPTE+TP
Sbjct: 263 RESLPPTEKTP 273


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 343 LLNSAWTSTDCFLATGL 293
           +LN+ WT +D  L+ GL
Sbjct: 447 ILNTFWTKSDVDLSRGL 463


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 675 IDPSPYSLSPISAKSEKLLRSPR 743
           I   PY+L+     S+KLLR  R
Sbjct: 156 IQACPYTLNIFDLTSDKLLRQYR 178


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 352 LSPLLNSAWTSTDCFLAT 299
           L P+L  +W S D  L T
Sbjct: 106 LGPMLCDSWVSLDILLCT 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,737
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)